Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00689 ATGGGTAAGAGCAAAAACTCTGATGTTTTTTCTCTTCTCCTTCCCCTCCTCTTCTTCACTCTTGTCGGAACCTCTCATGCCGGCGGCATAGCCATCTACTGGGGCCAAAACGGCAACGAGGGCACCCTTTCCGAAGCATGTGCCACAGGGAGATACACTCACGTCAACATAGCTTTCCTCAACAAATTTGGCAATGGCCAAACCCCAGAAATGAACCTGGCTGGTCACTGCAACCCCGCGACCAATTCCTGCACAAAGTTCAGCGCTGAAATCAAGGACTGCCAAAGCAAAAACATCAAGGTGTTGCTTTCCATCGGTGGTGGCATTGGAAGCTACACTTTGGCTTCCGTTGAGGATGCAAGGAACGTTTCAACCTTCCTGTGGAACACTTTCTTGGGAGGCAAATCATCAACACGACCATTAGGTGATGCTGTGTTAGATGGCATAGATTTCGACATAGAACAAGGCTCAACAGAAAACTATGAGCACCTTGCACGTTTCCTTAAAGCGTATAGTAGCAAAGGGAAGAGGGTATACCTAGGTGCTGCCCCTCAGTGTCCAATTCCCGATAGGTTTTTGGGCACTGCCCTAGACACGGGCCTATTTGACTTTGTTTGGGTTCAGTTCTACAACAACCCTCCATGTCAGTATGCTGATGGGAGCGTAACCAACCTTCTGAATTCTTGGAACCGTTGGACTAGTACAGTACCTGCTGGGAAGATATTCTTAGGGTTGCCGGCGGCTCCGGCAGCCGCTGGCAGCGGTTTCATCCCGGCCGATGTGTTGACGTCTCAGATCCTGCCGGTGATTAAGGAGTCACCAAAATATGGTGGGGTGATGCTGTGGTCAAGATTCTTTGATGTCCAGAACGGGTATAGTACTTCAATTATTGGAAGCGTGTGA 903 0.4939 MGKSKNSDVFSLLLPLLFFTLVGTSHAGGIAIYWGQNGNEGTLSEACATGRYTHVNIAFLNKFGNGQTPEMNLAGHCNPATNSCTKFSAEIKDCQSKNIKVLLSIGGGIGSYTLASVEDARNVSTFLWNTFLGGKSSTRPLGDAVLDGIDFDIEQGSTENYEHLARFLKAYSSKGKRVYLGAAPQCPIPDRFLGTALDTGLFDFVWVQFYNNPPCQYADGSVTNLLNSWNRWTSTVPAGKIFLGLPAAPAAAGSGFIPADVLTSQILPVIKESPKYGGVMLWSRFFDVQNGYSTSIIGSV 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00689 300 Pfam Glycosyl hydrolases family 18 30 284 IPR001223 GO:0005975
Vian3g00689 300 Gene3D Glycosidases 28 299 - -
Vian3g00689 300 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 28 300 IPR001223 GO:0005975
Vian3g00689 300 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 146 154 IPR001579 GO:0004553|GO:0005975
Vian3g00689 300 SUPERFAMILY (Trans)glycosidases 25 296 IPR017853 -
Vian3g00689 300 PANTHER ENDOCHITINASE 14 296 - -
Vian3g00689 300 CDD GH18_hevamine_XipI_class_III 28 298 IPR045321 -
Vian3g00689 300 FunFam Acidic endochitinase SE2 28 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00689 Vian-Chr3 7048366 7049268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00689 28 300 Glycoside Hydrolase AT5G24090 67.399 1.71e-147 414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00259 5 5423050 5424124 Vian3g00689 3 7048366 7049268 ECH
Vian3g00689 3 7048366 7049268 Vian3g00689 3 7048366 7049268 ECH
Vian8g00952 8 24190550 24191400 Vian3g00689 3 7048366 7049268 PCT