Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00356 ATGGCAATCCAGCAACACAATCACCAACTACAACATAACGAGAATGTCTCATCTCTCCTTGATGCCCTTTACTGTGATGAAGCAAAGTGGGAAGATGAAGAGGAGGAGGAAGAAGAAGATGAAGAGAGTGATGTCACAACAAACAACGATGCATGCAACGGACCTTCTCTTTTCCCTCTGCTCTTGTTGGAGCAAGACTTCTTCTGGGAAGACCAGGAACTGAACTCTCTCTTTTCCAAAGAGAAGCTTCAGCATCAACAACTTTACGGCTATAACATTGATGCTAATAACAATAATGATGCTTGTGACAGTACTAACAATAATGTGCGTTTGGACCCTTCTTTCTCTCAGCCTCGTCGTGAGGCTGTGGAATGGATGCTCAAAGTCAATGCTCACTATGGATTTTCTGCTCTCACTGCAACACTGGCCGTTACTTACCTGGATAGGTTCCTTCTAAGCTTCCATTTTCAAAGGGAGAAGCCTTGGATGATCCAGCTCGTGGCTGTCACTTGCATCTCTTTGGCAGCAAAAGTTGAAGAAACTCAAGTGCCTCTTCTCTTAGACCTTCAAGTGCAGGACACTAAGTATGTGTTTGAGGCAAAGACTATTCAGAGAATGGAGCTGCTGGTGCTGTCCACCCTCAAATGGAAGATGCATCCCGTGACCCCACTCTCGTTTCTAGATCACATCATAAGAAGGCTTGGATTGAAAACTCATCTTCACTGGGAGTTTCTCAGGCGCTGCGAGCATCTTCTTCTGTCTGTGCTTTTGGATGCGAGATTTGTTGGGTGCCTTCCTTCTGTTATGGCCACTGCAACAATGCTGCATGTTATAGACCAGATTGAACACAGTGGTGGGATGGAATACAAAAATCAGCTTCTGAGTGTTCTCAAAATTAACAAGGAGAAAGTAGATGAGTGTTATAATGCTATTCTCCAACGCTCAAATGGCAATAGTTATGGTCATAACAACAACATTTACAAACGCAAGTATGAGGAAATTCCAGACAGCCCAAGTGGCGTAATTGATGCTGCATTTGGCTCTGATGGTTCCAACGATTCGTGGGCAGTGGGGTCATCACTATATTCATCACCAGAGCCTCTGTTCAAGAAGAGCAGAACCCAAGGACAACAAATGAAATTGTCACCACTTAATCGGGTCATTGTCGGAATTGTTGGCACATCTCCTTGA 1191 0.4433 MAIQQHNHQLQHNENVSSLLDALYCDEAKWEDEEEEEEEDEESDVTTNNDACNGPSLFPLLLLEQDFFWEDQELNSLFSKEKLQHQQLYGYNIDANNNNDACDSTNNNVRLDPSFSQPRREAVEWMLKVNAHYGFSALTATLAVTYLDRFLLSFHFQREKPWMIQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQRMELLVLSTLKWKMHPVTPLSFLDHIIRRLGLKTHLHWEFLRRCEHLLLSVLLDARFVGCLPSVMATATMLHVIDQIEHSGGMEYKNQLLSVLKINKEKVDECYNAILQRSNGNSYGHNNNIYKRKYEEIPDSPSGVIDAAFGSDGSNDSWAVGSSLYSSPEPLFKKSRTQGQQMKLSPLNRVIVGIVGTSP 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00356 396 ProSitePatterns Cyclins signature. 119 150 IPR006671 -
Vian3g00356 396 SMART Cyclin_C_2 221 350 IPR004367 -
Vian3g00356 396 SUPERFAMILY Cyclin-like 222 331 IPR036915 -
Vian3g00356 396 CDD CYCLIN_AtCycD-like_rpt1 119 216 - -
Vian3g00356 396 SMART cyclin_7 124 212 IPR013763 -
Vian3g00356 396 Pfam Cyclin, C-terminal domain 221 331 IPR004367 -
Vian3g00356 396 SUPERFAMILY Cyclin-like 115 219 IPR036915 -
Vian3g00356 396 FunFam D3-type cyclin 112 219 - -
Vian3g00356 396 Gene3D - 220 311 - -
Vian3g00356 396 Gene3D - 117 219 - -
Vian3g00356 396 CDD CYCLIN_AtCycD-like_rpt2 221 311 - -
Vian3g00356 396 PANTHER CYCLINS 50 322 IPR039361 -
Vian3g00356 396 Pfam Cyclin, N-terminal domain 117 218 IPR006671 -
Vian3g00356 396 MobiDBLite consensus disorder prediction 29 51 - -
Vian3g00356 396 MobiDBLite consensus disorder prediction 29 46 - -
Vian3g00356 396 FunFam CYCLIN D32 220 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00356 Vian-Chr3 3426713 3428349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00356 1 313 Core Cell Cycle Gene Families AT4G34160 53.994 1.49e-111 330
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00356 3 3426713 3428349 Vian3g00356 3 3426713 3428349 ECH
Vian4g02225 4 39054106 39058697 Vian3g00356 3 3426713 3428349 ECH
Vian7g00693 7 15116639 15118206 Vian3g00356 3 3426713 3428349 ECH
Vian10g00558 10 5261793 5263097 Vian3g00356 3 3426713 3428349 PCT