Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00347 ATGTTCATGCTGGGTAGCATAAAACGTGCCACATCCCAATCAGTGTTGGGTTCCATGGCGCTTTTTCGATCATCCAAAAGGTTTCTCATCTCCAATCTCCTCCTTCCCCTCTCGGAATCTTCTTCAATATCCCTTAATCCTTCGTCAAGTTCAAATTTTCACCACCATTACCCCAAACCCACAATCCAATTTTCCTACGGGTCTCCAAAACACACCACATTGGCCTTCCACACGGCCCAACCTAGGTCCACATCCAACGCCGAAGCAATCTGCAGAATCTTATCCAACTCTCGGGACTCCACCGTCGCTGCCTCTCTCGCTGCTGTTGTGGTGAATCCCTCGCCGGATCTCGTCCTCGAGGTCTTGAACAAACTCAGTAATGCCGGTACCCTGGCGCTTTCGTTTTTCCGTTGGGCCGAGAAGCAAGGCGAGTTCAAACACACCACAGAGACCTTTCACGCATTGATCGAAGCACTGGGTAAGATCAGGCAGTTCAAATTGATTTGGACTTTGGTCGACGACATGAAGCAACGAAAGTTGCTGACTTCTGACACTTTTGCCCTCGTTGCTCGGCGATACGTGCGAGCACGGAAGGTCAAGGAAGCAACCGAGACATTTGAGAAGATGGAGCGTTACGGTTTGAAGCCGCATGTATCGGATTTCAATAAGTTGATCGACGTGTTGTGTAAATCCAAGGGTGTTGAGAAGGCACATGAGATGTTTGATAAAATGCGGCACTTAGGGTTGGACCCCGATATCAAGTCCTACACCATTTTGCTAGAAGGGTGGAGTCATCTGCAGAACTTGATCAAACTCAATGAGTTGTGTAGGGAAATGGAGGATAAAGGGTTTCAGATTGATGTTGTTGCGTATGGGATAATCATCAATGCGTATTGCAAGGCTAAGAAATTTGATGAAACCATTGGGTTGTACCATGAGATGAAAGCTAAGGGTCTGAGGCCTAGTCCCCATGTGTATTGTACTTTGATTAATGGTTTGGGTTCGGATAAGAGATTGAACCAAGCTCTTGAGTTTTTTGAGGCATCTAAGGCTAGTGGCTTTGCACCTGAGGCTCCCACCTACAATGCGGTTGTTGGGGCTTATTGCTGGTCTTTGCGTATGGATGATGCGTATAGGATGGTTGGAGAGATGAAAAAGTGTGGGATTGGTCCAAATTCTCGAACTTTTGATATTATACTTCATCATCTTATAAAGGGTCGTAGGATTGAAGAGGCTTGCTCGGTTTTTCACAGAATGAGTGGCGAGTTTGGGTGTGAGCCGAGTGTGAGCACGTATGAGATCATGGTGAGGATGTTTTGTAATGAAGAGAGATTGGATATGGCGATGGCATTTTGGGATGAGATGAAAGAGAAGGGAATTCTTCCTGGAATGCACATGTTCTCCACGTTGATCTGTTCCTTGTGTCATGAAAGTAAGTTGAATGAAGCGTGTAAGTACTTTCAAGAAATGTTAGATATGGGTATCCGGCCTCCGGCCAAAATGTTCAGCACCTTGAAGGAAGCTCTAGTTGATGCGAGGATGGAGCATATTGCCATGCATTTTGCTTTGAAAATTGATAAACTCAGGAAGTCTCCATTGGTTGCTTGA 1608 0.459 MFMLGSIKRATSQSVLGSMALFRSSKRFLISNLLLPLSESSSISLNPSSSSNFHHHYPKPTIQFSYGSPKHTTLAFHTAQPRSTSNAEAICRILSNSRDSTVAASLAAVVVNPSPDLVLEVLNKLSNAGTLALSFFRWAEKQGEFKHTTETFHALIEALGKIRQFKLIWTLVDDMKQRKLLTSDTFALVARRYVRARKVKEATETFEKMERYGLKPHVSDFNKLIDVLCKSKGVEKAHEMFDKMRHLGLDPDIKSYTILLEGWSHLQNLIKLNELCREMEDKGFQIDVVAYGIIINAYCKAKKFDETIGLYHEMKAKGLRPSPHVYCTLINGLGSDKRLNQALEFFEASKASGFAPEAPTYNAVVGAYCWSLRMDDAYRMVGEMKKCGIGPNSRTFDIILHHLIKGRRIEEACSVFHRMSGEFGCEPSVSTYEIMVRMFCNEERLDMAMAFWDEMKEKGILPGMHMFSTLICSLCHESKLNEACKYFQEMLDMGIRPPAKMFSTLKEALVDARMEHIAMHFALKIDKLRKSPLVA 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00347 535 Pfam PPR repeat 424 456 IPR002885 -
Vian3g00347 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Vian3g00347 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Vian3g00347 535 Gene3D Tetratricopeptide repeat domain 399 523 IPR011990 GO:0005515
Vian3g00347 535 Gene3D Tetratricopeptide repeat domain 84 216 IPR011990 GO:0005515
Vian3g00347 535 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 47 402 - -
Vian3g00347 535 Gene3D Tetratricopeptide repeat domain 264 389 IPR011990 GO:0005515
Vian3g00347 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Vian3g00347 535 Pfam PPR repeat family 360 404 IPR002885 -
Vian3g00347 535 Pfam PPR repeat family 220 262 IPR002885 -
Vian3g00347 535 Pfam PPR repeat family 287 333 IPR002885 -
Vian3g00347 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
Vian3g00347 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Vian3g00347 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Vian3g00347 535 NCBIfam pentatricopeptide repeat 185 216 IPR002885 -
Vian3g00347 535 NCBIfam pentatricopeptide repeat 466 497 IPR002885 -
Vian3g00347 535 NCBIfam pentatricopeptide repeat 289 322 IPR002885 -
Vian3g00347 535 NCBIfam pentatricopeptide repeat 395 429 IPR002885 -
Vian3g00347 535 NCBIfam pentatricopeptide repeat 431 462 IPR002885 -
Vian3g00347 535 NCBIfam pentatricopeptide repeat 221 253 IPR002885 -
Vian3g00347 535 NCBIfam pentatricopeptide repeat 360 392 IPR002885 -
Vian3g00347 535 NCBIfam pentatricopeptide repeat 325 356 IPR002885 -
Vian3g00347 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 427 IPR002885 -
Vian3g00347 535 Pfam PPR repeat 466 495 IPR002885 -
Vian3g00347 535 Pfam PPR repeat 191 214 IPR002885 -
Vian3g00347 535 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00347 Vian-Chr3 3345796 3347403 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00347 151 513 Glycosyltransferase AT1G05670 26.099 1.11e-45 169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00347 3 3345796 3347403 Vian3g00347 3 3345796 3347403 ECH