Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00343 ATGGTGGGTTTTGGCGGGAAAAAAGTGCGCCAAATGGTTGTTGGTTTCGGCGGCAGTGGCTTCGGTCAGGTCGCTATCGCTGTCGCGGTCTCCTTCCTCGTCCGCGTCTTCTCCGCTCCCGGCCCTGCTCTCTCGCCGGATAATGACCCCGACGATACGCAGGAGAACGGTTCTGACGATGCCGAAGCTCCTCCAGCCGGAAAGGTCACACCGGTTACAATCAGATGGAGAAACATCAATTGCTGCCTTTCCGATAAATCCTCCAAGTCCGTAAGATTTCTGCTTAGAAATGTGAGTGGAGGAGCGAGGCCTGGAAGGTTATTAGCCATAATGGGACCTTCAGGTTCAGGGAAGACAACGTTGCTTAATGTTCTTGCGGGTCAGCTCACAGCATCTCCTCGGTTGCATTTGAGTGGCGTTTTGGAGTTTAATGGAAAGCCTGCTTCGAAGAACGCGTACAAGTTTGCTTATGTGAGACAGGAGGATCTCTTTTTCTCGCAGCTCACTGTTCGGGAGACGTTGTCACTTGCTACCGAACTTCAGCTTCCCAACATATCTTCTGCGGAAGAGAGGGATGAGTTCGTGAACACTCTCCTTTTCAAACTAGGCTTGGTTAGTTGTGCTGATACACGTGTTGGTGATGCAAAAGTTCGTGGAATTAGTGGTGGTGAAAAGAAACGCTTGTCCTTGGCGTGTGAACTGCTTGCTAGTCCATCTGTTATATTTTCCGATGAACCCACAACAGGACTTGATGCCTTCCAGGCTGAGAAAGTCATGGAAACTCTACAGCAACTTGCACAAGATGGTCATACCGTTATATGTTCTATACATCAGCCAAGAGGCTCAGTGTATAGTAAATTTGACGATATCATCTTGCTAACAGAGGGTTCACTTGTTTATGCCGGTCCTGCTCGTCATGAACCACTGACTTACTTCTCAAAATTTGGGTACCAGTGCCCGGATCACGTAAATCCTGCTGAATTTTTGGCAGATCTCATATCCATAGACTACAGTTCTGCTGATAGTGTCTATACCTCTCAAAAAAGAATTGATGGTCTTATTGAGTCATTCTCGCAATTGTTATCAAGAGACATATACGCAACTTCAATTAATGTAAACGATCTCTCCAACAGTAGAAAGAAAATCACCCAGAGGGTGGCAGTAGGAAAGAAGAAAGGAATTTGGTGGAAGCAATTTTGGTTGCTCCTTAAAAGAGCATGGATGCAGGATGGGAGAACACGCATAAATTGCTTGATAGTACCCATAAAGTTTGCCTTCTTGCACAAATTTAAGTATGTTGAGGTTTCCTTATGTCATTTGATATATAGTGAAACGTATTTTTCATTCATTGGATTAATGGTTGTCTGGCTGATTAGGCTTCGCGAGATGCACCAACAAACAAAGTTCGGGCAAGGATGTCAATTGCATCAGCAATTATCTTTGGGTCAGTATTTTGGAGAATGGGAAATTCTCAGACTTCAATACAAGACAGAATGGGATTGCTTCAGATTTGGAAAGTTCTGTGGCATTATCACTATGGAATCTTTTGCTGCATCTGCTATGGGTCTCACTGTTGGTGCTATGGTTCCAACGACTGAAGCAGCAATGGCAGTAGGTCCCTCTCTGATGACAGTTTTTATTGTTTTTGGAGGCTACTATGTCAATCCAGAGAATACCCCAATCATTTTCCGCTGGATTCCTAATGTTTCTCTGATTAGATGGGCTTTTCAGGGACTTTCTATCAATGAATTTAGTGGTCTTCAATTTGACCATCAACATTCATTTGATATTCAAACTGGAGAGCAGGCGCTAGAGCGAATTTCCTTTGGGAAAAGTAGGATCAGGGATACGGTGATAGCACAAAATAGAATACTACTATTTTGGTATTGCACCACCTATCTTCTCCTCGAGAAAAACAAACCCAAATACCAGCAACTTGAAACCCCTATTGACGACAACGAGCCGCTTTTAAAACTTGAGGAGCTCAATTCTGAACAAGTTGATCAGACACTTGAAGCTCCGCCAGTTGGCCAAGTTGATTCCAACCAGGCCCCTGAGTCACCTGGAGTAGATCTTGTTGGCCCTTTTGTCCTCGAAGAACACAAGGTGTTCTCTAATGTCACCACACCTCGTAGGAGCTTAATATGTGCATCAAAAAGTGACTCTTTTGGGCACCACTACGAGGGGAAGATGGTGGACGACAACATGATCCTTCTCAGAATGCGAATTCGAGAGATTGAGACACTGGAAACGAAGGGTAAAGATTCTTCCGACTGGAACGAATGGGAGAAAAAGTACTTCCAGAATTACGATTCAGATTCATGTTGTAGCGGTGGCAGGAAAAGTTGCTGTTTATCTCCGATTAAGGCTTCGATGAGAGGTTCAGCAGATCAGAATTTCAGTGGAAGGTTGGTGGATGAGGGCATGATAACACTGAGGAAGAGGATCCATGAGATGAACATGATAGAGAGGAACTACGAGCCACCTGCAGATTGGATGGATTGGGAGAAACGCTGTTATACAAAGTATGACTCCATGATTTGTGAAGCATTGGGAGTTTTGCAGACGCAGTTGATGAATACTAGGCCTAGTTTGGCTCTTGGAGCCATGGCTTTGGTTGCAATCAGTGTTCCAACTTCTTCTGCTGTGGCTTTCTTTCATTTGGTTGAGTTCGCTAAGGCTGTTCTTGCTGGAGTTCATCCCTCCTAG 2709 0.447 MVGFGGKKVRQMVVGFGGSGFGQVAIAVAVSFLVRVFSAPGPALSPDNDPDDTQENGSDDAEAPPAGKVTPVTIRWRNINCCLSDKSSKSVRFLLRNVSGGARPGRLLAIMGPSGSGKTTLLNVLAGQLTASPRLHLSGVLEFNGKPASKNAYKFAYVRQEDLFFSQLTVRETLSLATELQLPNISSAEERDEFVNTLLFKLGLVSCADTRVGDAKVRGISGGEKKRLSLACELLASPSVIFSDEPTTGLDAFQAEKVMETLQQLAQDGHTVICSIHQPRGSVYSKFDDIILLTEGSLVYAGPARHEPLTYFSKFGYQCPDHVNPAEFLADLISIDYSSADSVYTSQKRIDGLIESFSQLLSRDIYATSINVNDLSNSRKKITQRVAVGKKKGIWWKQFWLLLKRAWMQDGRTRINCLIVPIKFAFLHKFKYVEVSLCHLIYSETYFSFIGLMVVWLIRLREMHQQTKFGQGCQLHQQLSLGQYFGEWEILRLQYKTEWDCFRFGKFCGIITMESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNPENTPIIFRWIPNVSLIRWAFQGLSINEFSGLQFDHQHSFDIQTGEQALERISFGKSRIRDTVIAQNRILLFWYCTTYLLLEKNKPKYQQLETPIDDNEPLLKLEELNSEQVDQTLEAPPVGQVDSNQAPESPGVDLVGPFVLEEHKVFSNVTTPRRSLICASKSDSFGHHYEGKMVDDNMILLRMRIREIETLETKGKDSSDWNEWEKKYFQNYDSDSCCSGGRKSCCLSPIKASMRGSADQNFSGRLVDEGMITLRKRIHEMNMIERNYEPPADWMDWEKRCYTKYDSMICEALGVLQTQLMNTRPSLALGAMALVAISVPTSSAVAFFHLVEFAKAVLAGVHPS 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00343 902 Pfam ABC-2 type transporter 277 343 IPR043926 GO:0140359
Vian3g00343 902 FunFam ABC transporter G family member 7 72 310 - -
Vian3g00343 902 SMART AAA_5 104 297 IPR003593 GO:0016887
Vian3g00343 902 Pfam ABC-2 type transporter 499 584 IPR013525 GO:0016020|GO:0140359
Vian3g00343 902 Gene3D - 68 309 IPR027417 -
Vian3g00343 902 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 305 IPR027417 -
Vian3g00343 902 MobiDBLite consensus disorder prediction 43 67 - -
Vian3g00343 902 Pfam ABC transporter 95 247 IPR003439 GO:0005524
Vian3g00343 902 CDD ABCG_EPDR 71 302 - -
Vian3g00343 902 ProSitePatterns ABC transporters family signature. 220 234 IPR017871 GO:0005524|GO:0016887
Vian3g00343 902 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 74 320 IPR003439 GO:0005524
Vian3g00343 902 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 503 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00343 Vian-Chr3 3294997 3307806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00343 94 314 Calmodulin-binding Proteins AT2G36910 28.444 1.92e-10 63.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00343 3 3294997 3307806 Vian3g00343 3 3294997 3307806 ECH