Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00330 ATGGCCGCGTCGCCGTCGTCCTCCACAGCGGCCTCAGCCAACATCGTGCTCGCGATCTTCGAGAAGAAGACCAATACCGTTGATATGTATCGCCCCCTCCGCAATTACGTGGCGTATCACTACTCCGAGCGCGAAGCGCAGAACGTCGAAGACGATCTACAAACCCTAAAGCAACTTCGCTACGAAATCGAACGTCACCTCGATCCGTCCCTGCCGGCGCGCCGCGATGTCCTCCAAACCTACTTCAAATCTCTTTGCCTTGTTGAGACGCGCTTCCCAATCTCCCCGGACCCTGACCACGTCAACGCCCTCACCTTTGTTTGGTTCGATGCCTTCAAGCCAAAGCAGAAGGCCTCGCAGCAGAACATCCACCTCGAGAAGGCCGCCGTGCTCTTCAATTTGGGCGCCGTTTACAGTCAGATTGGATGTTCATATGATCGGAACACCGTTGACGGCCGCCGCCAGGCCTCGCATGCCTTCATTGCTGCTGCCGGTTCCTTTGCCTTCCTCCGCGACAACGCCTCTATGAAGGCATCCGTTGGGAATTCCACCACCGTTGATTTGTCCGTTGAGTGTGCTGGGATGCTGGAGAAGCTCATGCTCGCGCAGGCGCAAGAGTGTGTCTTCGAGAACACCATTGCTAAAGGGAGCACTCCCGGTGTCTGTGCCAAGATCTCCAGACAGGTTGGGATATATTACGAGGAAGCTTTAGCTGCACTGAATGTTGCACCTTTGAGCCAGCATTTTGAAAAGTCCTGGATAGTTCATGTACAGTTAAAGGCTGCGCTGTTTTATGCAGAAGCTTGTTATAGGTATGGGTTGGAGCTGCACGATAAAGAGGAAATAGCGGAGGAGATTTCACGGCTACGGAGTGCTGTTAATGTGTTGACTGAGGCGAAGAAGAGCTCTAAGGGTGCTGCGGTGCAAATTCTTGATGCAATTGGCAAGTTAGAGGCCAATATTAATCGGAACCTTGAAAGAGCTGTCAAGGAGAATGATAGGGTTTATCTCATGAGAGTTCCTTCACCAAGTTCGTTAGCCCCCATTCCATCATTTTCTATGGTGAAGCCCATGGCAATGAATGAGGTGCTGGATGCAAGCAAAGAAAAAATGTTTGCAAGTCTTGTTCCTGACAGCAGTGCAAAGGCCCTCTCACGGTATACTGAAATGGTAGACGATGTTATAAGAACACAGGCTGAAAAGTTGCAGCAAGCTAGTGAGCTAACCCGAGTTAGGCTTAAGGAAATGGAACTGCCGGATTCCATTCTTGCTTTGGAAGGAAATTTTACTCTTCCAACAAGTCTCAAAGAAGATGTGGAGGCTGTGCAGATCAGTGGGGGCCCTGCTGGTTTGGAAGCAGAGTTGCAGCAACTTAAGGACCTAAGGAGGGTGAATCAAGAGTTGCTGGTCCAGACTGAGGAATTGTTGCAGAAGGAAGCAAGAGAAGATTCTCAATTTAGAAGTCAATTTGGCACGAAATGGACCAGGCCCCAGTCAAGCACCTTGACTAAAAACTTACAGGACAGGCTCAACCGGTTTGCAGGTAACTTGAAGCAGGCTGCTGAAAGTGATGGTAGGATTGAGCGATCAGTTAGAGAACATTTAGCACTCATGTCGATCCTTGATGCTCGTCCGATTGAATCCGCACTTCCAAGCTTGGCAAGGCCTATTATGTCTTTTGATCAAAATGAAGATGCTATTGTGGGGTCTCTCAAGCAAAGTTTGAGGCAACTAGAAACTCTCGGAGCTCAAAGGGCTGGTCTTGAAGATATGCTTAAAGATATGAAAAGAAAGGATGATATATTACCAAAGTTGATGACTTCCACTGGTTCTTATGATGATCTCTTCAAGAAGGAGCTAGCAAAATATGACCATATTTGTGATGAAATAGCTCAAAACATTGAGGCTCAAGAGCAATTGTTGCTACAAATCCAGGCTCAAAATGATGAGTTCTCTGCTATCTTCAATCTTGAAGATTACAAAGCTTCACGTGAAAAAGCCTACAAGCAGATTGAAGCTGCCATTGCAAAATTTCGAGAAATAAAGGACAACATCAATGAAGGGTTAAAATTCTATGTTACGCTGCAGGATGCAATCACAAACGTAAAGCAGCAGAGCAACGACTTTGTAATGACAAGGAACATTCAGTGCAGGGAAATGATTGAGGATGTTCAGAGACAATTGGCTGGTCTGAGTTTCCAGGACAAAAACCCAGGTGCTTCTTTTAACAGCAACTATCCATCAGTTGGAAGCCAAAATCAAAGAGCCAGTACACAAACAGATCCTCGGCCACAAGCACCTTATTATCAGCCAGTTGAGCAGCCACCAGTTGCTCCCTATGGCCATCATGCACCTCCCTCATATGGTGGTCCTGCGCATCATCAGCCTCCACCTCCATACCACATTCCACCATCATCAACTGCTCCATACCCACCCCCTCAGGTTCACCAGCAGCCACCGGGAAACCATGAGTATGGCCAGCCAGCATATCCAGGATGGCGTGGTCCGTACTATAGTGCACAAGCACAGCAACCTGGCTCTGTGCCACGACCTCCTTATACAATTCCATCCCCGTATCCTCCGCCTCACCAAAGTGGTTACTATAAGCAGCAATAG 2616 0.4817 MAASPSSSTAASANIVLAIFEKKTNTVDMYRPLRNYVAYHYSEREAQNVEDDLQTLKQLRYEIERHLDPSLPARRDVLQTYFKSLCLVETRFPISPDPDHVNALTFVWFDAFKPKQKASQQNIHLEKAAVLFNLGAVYSQIGCSYDRNTVDGRRQASHAFIAAAGSFAFLRDNASMKASVGNSTTVDLSVECAGMLEKLMLAQAQECVFENTIAKGSTPGVCAKISRQVGIYYEEALAALNVAPLSQHFEKSWIVHVQLKAALFYAEACYRYGLELHDKEEIAEEISRLRSAVNVLTEAKKSSKGAAVQILDAIGKLEANINRNLERAVKENDRVYLMRVPSPSSLAPIPSFSMVKPMAMNEVLDASKEKMFASLVPDSSAKALSRYTEMVDDVIRTQAEKLQQASELTRVRLKEMELPDSILALEGNFTLPTSLKEDVEAVQISGGPAGLEAELQQLKDLRRVNQELLVQTEELLQKEAREDSQFRSQFGTKWTRPQSSTLTKNLQDRLNRFAGNLKQAAESDGRIERSVREHLALMSILDARPIESALPSLARPIMSFDQNEDAIVGSLKQSLRQLETLGAQRAGLEDMLKDMKRKDDILPKLMTSTGSYDDLFKKELAKYDHICDEIAQNIEAQEQLLLQIQAQNDEFSAIFNLEDYKASREKAYKQIEAAIAKFREIKDNINEGLKFYVTLQDAITNVKQQSNDFVMTRNIQCREMIEDVQRQLAGLSFQDKNPGASFNSNYPSVGSQNQRASTQTDPRPQAPYYQPVEQPPVAPYGHHAPPSYGGPAHHQPPPPYHIPPSSTAPYPPPQVHQQPPGNHEYGQPAYPGWRGPYYSAQAQQPGSVPRPPYTIPSPYPPPHQSGYYKQQ 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00330 871 Gene3D alix/aip1 like domains 423 704 - -
Vian3g00330 871 Pfam ALIX V-shaped domain binding to HIV 431 715 IPR025304 GO:0005515
Vian3g00330 871 MobiDBLite consensus disorder prediction 735 765 - -
Vian3g00330 871 Gene3D alix/aip1 in complex with the ypdl late domain 377 655 - -
Vian3g00330 871 CDD BRO1_Alix_like_1 16 371 - -
Vian3g00330 871 Coils Coil 279 299 - -
Vian3g00330 871 CDD V_Alix_like_1 377 713 - -
Vian3g00330 871 MobiDBLite consensus disorder prediction 849 863 - -
Vian3g00330 871 Pfam BRO1-like domain 17 394 IPR004328 -
Vian3g00330 871 SMART BRO1_2 15 399 IPR004328 -
Vian3g00330 871 Coils Coil 657 684 - -
Vian3g00330 871 Gene3D alix/aip1 like domains 12 376 IPR038499 -
Vian3g00330 871 Coils Coil 39 59 - -
Vian3g00330 871 Coils Coil 578 598 - -
Vian3g00330 871 MobiDBLite consensus disorder prediction 790 818 - -
Vian3g00330 871 Coils Coil 627 647 - -
Vian3g00330 871 ProSiteProfiles BRO1 domain profile. 15 409 IPR004328 -
Vian3g00330 871 MobiDBLite consensus disorder prediction 735 871 - -
Vian3g00330 871 Coils Coil 451 478 - -
Vian3g00330 871 MobiDBLite consensus disorder prediction 768 782 - -
Vian3g00330 871 PANTHER PCD6 INTERACTING PROTEIN-RELATED 16 867 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00330 3 3175802 3185847 Vian3g00330 3 3175802 3185847 ECH