Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00316 ATGAGAACAATGGTTGCCACTTTCTCATATCCAGCTTCTACCTACTTTGTTAGGTCTTGTTCCATGAGAGAAAACCATGACCAACTTAAGCAGCCAGTGAACACCGGCATCAGAACTAATGGGAGTTTTAGGTCGCCAATTAAAGTTGAGATACTAGGCCAAATACCTGCAACCACTTCCACCACTCTCGGTCAAGCTGTTACAATTGATGAAAATTGTCTGCGCCAAAACATCCCAACAAAGAAGAAAATGGTTGATCCTCATCGTCAAGGGCTCATCACTGAAGGTGGAGTTGGTTATAGACAGACCATTGTCATTAGGTCCTATGAAGTTGGAGCTGATAAAACCGCCACGCTTGAGAGCATCCTCAATCTTCTTCAGGAAACAGCATTAAACCATGTTTGGATGTCTGGGCTGCTGGGTGATGGGTTTGGGGCGACACACGGAATGGTGAGGAACGATCTCATTTGGGTTGTCTCAAGAATGCAAGTTGTGATTGATTACTATCCCATCTGGGGAGAGGTAGTTGAAATTGACACATGGGTTGGAGCATCAGGCAAGAATGGAATGCGGCGGGACTGGCTGATAAGAAGCCAAGCCACAGGCCACATTTTTGCACGTGCGACAAGCACGTGGGTGATGATGAACCGCAAAACAAGACGTCTCTCCAAGATGCCAGAAGAGGTGAGAGCAGAGGTTGCACCTTGGTTTATAGAGAAGCAAGCAATAAAGGAAGATGCTCAAGAAAAAATAGTCAAATTGGATAAAGAGGCAAAATACATGAATTCTGATTTGAAGCCCAAGAGAAGTGATTTGGACATGAACCAACATGTTAATAATGTGAAGTATGTAAGATGGATGCTAGAGACCATCCCAGACCAAATTCTGGAGGGGCACCAATTATCTAGTATCACACTGGAGTACAGAAGGGAGTGTGGAAGCTCAGATATTGTTCAATCATTATGTGAACCAGAAGATGATGAAATACTTCATGGTGTGGTAGAGCCAGATTACTGCACAAATCTTCTCAATGGGTTATCATCAGATATTATAAATGGTAGTGGAGTGCTGACTTACCTTGAGCAGAGGCCATTAAGGTATACACACCTTCTACAAATCAAAGGGGACAAACAAAACGACGAAATTGTCAGAGGAAGGACAACATGGAAGAGGAAGATTGTTACAATGCCATTTTCCACTTAG 1203 0.4347 MRTMVATFSYPASTYFVRSCSMRENHDQLKQPVNTGIRTNGSFRSPIKVEILGQIPATTSTTLGQAVTIDENCLRQNIPTKKKMVDPHRQGLITEGGVGYRQTIVIRSYEVGADKTATLESILNLLQETALNHVWMSGLLGDGFGATHGMVRNDLIWVVSRMQVVIDYYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATSTWVMMNRKTRRLSKMPEEVRAEVAPWFIEKQAIKEDAQEKIVKLDKEAKYMNSDLKPKRSDLDMNQHVNNVKYVRWMLETIPDQILEGHQLSSITLEYRRECGSSDIVQSLCEPEDDEILHGVVEPDYCTNLLNGLSSDIINGSGVLTYLEQRPLRYTHLLQIKGDKQNDEIVRGRTTWKRKIVTMPFST 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00316 400 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 46 393 IPR045023 GO:0006633|GO:0016297
Vian3g00316 400 Pfam Acyl-ACP thioesterase 99 390 IPR002864 GO:0006633|GO:0016790
Vian3g00316 400 CDD 4HBT 100 216 - -
Vian3g00316 400 Gene3D Hotdog Thioesterase 92 396 - -
Vian3g00316 400 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 260 397 IPR029069 -
Vian3g00316 400 Coils Coil 244 264 - -
Vian3g00316 400 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 99 246 IPR029069 -
Vian3g00316 400 FunFam Acyl-[acyl-carrier-protein] hydrolase 91 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00316 Vian-Chr3 3079644 3081806 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00316 84 400 Acyl Lipid Metabolism Gene Families AT1G08510 47.799 2.50e-100 302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00316 3 3079644 3081806 Vian3g00316 3 3079644 3081806 ECH