Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00308 ATGGACAAGGTTTGTGAGTTCTGCACGGCCCTGAGGCCACTTGTTTACTGTAAAGCTGATTCGGCATATCTTTGTCTATCCTGTGATGCGAAGGTGCATTTGGCAAATGCTTTGTCCGGCCGGCACCTCCGGAACCTTGTGTGTAACTCATGTGGACATCATGTTGCTCATGTTGTATGTTTGAACCACAAAATGTTAATCTGTCGAGACTGTGATAAAAAATTGCACAATGTTTCTTTATCACACCAGAAACGAGCTATCAGGAGTTTCATAGGTTGCCCTTCTGCTAAAGACTTTGCAGCACTCTGGGGGTTTGAATTGAATGAGATCGAAAACTGTGCCAGTCAGGATCAGTTTGATTCAGTTTCTTGTGTTTCTGCGGAATTGAATGTAGCACAAGTCTCAGGAAAGCCTGATATTCAAAATGGGGTCCCTTCACTGCTAGCTGGGGCCAAACTTGATGAGGAATCGACCGGTCAACAAGGTCAGGTTAGGAGAGAGAATGAATTCTTGCATAGTTGTCCTGGTGGTTTTATAAGGCTGTCGTTGGTGGTTTTGTGGTGTTGGAGTTGTTCTCTGTGTGAGGTGTTGGTGATATTGCACAATCATCAAGAGCGTCAAACTATTGTGCAGCAGATTATTGATCTAAAATGGCTCCAACAAAATGAGGAGATTGATTATTCTGCGAAGATCAGTAGGCTAAAAGAAAAAAAATCATCACCTTCATTATATCACACTCTTAAGAAATTGGACGAAAAATTCAATGGTCAAGCAAAAAATTCCCAGGATTTGGCTACTGATGTTCTGGAAAAAGACTGTCCTATTGTGGAGCCGAGTACAGAAACTTTGCCTTCTACTTTTTCTCAACTTGATAATTTATCTTCATCTTCAATTATCGATCTTCCCTTGCATGGAGAATTGTTCTGGACGTGCAGAAGTCCACTTCGATGTAATCAGCTGTGGTCCCAAAATATTCAAGACCTCGGTATATGTGAAGAACTTGTTCGTCTAGATGATTTTAACATCCCTGATGTTGACTTAACTTTCCAAAACTTCGATGAATTATTTGGAGGAGATCAGGATCCAATTAGAATATTGTTTGATGATCAAGATGTCTCCTGCTCTTCTTTAGAGAAGGATAAGTCAATCGACAAGTCAGATATTGACAATCTAAGTGCAATGGAGCTATTTATAACCATAACAGTTCAAAGAAATGCCATAGAAGAAGAATTGGAGGACTGCTGTATCCACCCATGTGATGCAATGATGGATCAAGCTAAGGTATACGAAGTCAAGGATTCTTCGGCTTCTGCATCCATTAATCTCTCCCAATCTGATCATGAGAACAAGGATATGAACCCTCTCGGCCAGTACTGTCCAGAAAGCATGGATCCTACTCATGCAACTCAACCATTTGATTCAGCTACACCCTTATCTGTTTTGGGAATCAGTCTGGAAAGCAGTTTCACACATGAGGACGGTATCCTTTCTCCCTACAGTGAAGGGAAGGCTTATTCAGGCATGAGAAGCAATTTCGACTTCTATCCAGGAAACCTGGAGCTAATATATCTCTCTCTCTTCCAGATTGTTCCTAATTATGAAGCATTTGTTCACTTGATAAATTGA 1626 0.4102 MDKVCEFCTALRPLVYCKADSAYLCLSCDAKVHLANALSGRHLRNLVCNSCGHHVAHVVCLNHKMLICRDCDKKLHNVSLSHQKRAIRSFIGCPSAKDFAALWGFELNEIENCASQDQFDSVSCVSAELNVAQVSGKPDIQNGVPSLLAGAKLDEESTGQQGQVRRENEFLHSCPGGFIRLSLVVLWCWSCSLCEVLVILHNHQERQTIVQQIIDLKWLQQNEEIDYSAKISRLKEKKSSPSLYHTLKKLDEKFNGQAKNSQDLATDVLEKDCPIVEPSTETLPSTFSQLDNLSSSSIIDLPLHGELFWTCRSPLRCNQLWSQNIQDLGICEELVRLDDFNIPDVDLTFQNFDELFGGDQDPIRILFDDQDVSCSSLEKDKSIDKSDIDNLSAMELFITITVQRNAIEEELEDCCIHPCDAMMDQAKVYEVKDSSASASINLSQSDHENKDMNPLGQYCPESMDPTHATQPFDSATPLSVLGISLESSFTHEDGILSPYSEGKAYSGMRSNFDFYPGNLELIYLSLFQIVPNYEAFVHLIN 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00308 541 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 446 - -
Vian3g00308 541 SMART bboxneu5 48 87 IPR000315 GO:0008270
Vian3g00308 541 SMART bboxneu5 1 47 IPR000315 GO:0008270
Vian3g00308 541 CDD Bbox1_BBX-like 4 44 - -
Vian3g00308 541 ProSiteProfiles Zinc finger B-box type profile. 43 87 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00308 Vian-Chr3 2939742 2945500 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00308 47 363 C2C2-CO-like Transcription Factor Family AT1G68190 26.829 9.23e-20 89.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00308 3 2939742 2945500 Vian3g00308 3 2939742 2945500 ECH