Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00300 ATGGAGGCGCAACCGCCAACACCCTCGACTGCGCCGCCACCTCCGCCGCCACACCTCAGCTACCCTGACTCGGTGGAATCCTCGCCACGCTCCCGCAACACCGACTCCTGGGACGAGCCCTTTGCGCCGGCGTCGTCCAAGCTACGTCTGATGTGCAGCTACGGTGGACATATCGTTCCGCGTCCACACGATAAGTCCCTCTGTTACGTCGGCGGCGACACGCGCATCATCGTTGCGGAACGCGCTACGTCACTCGCGGACCTCTCCACGCGCCTCTCCAAGACGTTCCTGAACGGACGGACCTTTACGCTGAAGTACCAACTTCCGAACGAGGACCTCGATTCTCTCATCTCCGTCACCACTGACGAAGACCTGGAGAACATGATCGACGAGTATGACCGCACCGCCGCCGCCGCCACCTCCGTCGTCAAACCCTCCCGCATCCGCCTCTTTCTCTTCCCCACCAAACCCGATTCCACTCATTCCATCCCCCCCCAAATTCTCGACACCTCGACCAAATCGGACGACTGGTTCTTGAATGCCCTAAACGGCAACGGAGTACCTAACCGAGGGTTTTCCGACTCTGCTTCTGTTAATTGCCTCGTCGATCTCGACGACGAGGTTGCCGGGAACAACCTCGAACCCGGTTCCAAGGACGTTGGGGAAGGTGGTCCTGGTGCTGGTGTTGGTGGAGGCGCTTCTTTGGGTGGATCTTTTGGGAACGGCAAGAATTTGAAGCAGGATGTTCACTCCGTTCCCGATTCGCCCATGCTCGAAACGACGTCATCGTTTGGGTCCACGTCGTCGTCACCGTCGCTCGCCAATTTGCCGCCGATTAGGGTTCATGTCGTGGAGGATCAGAAGGTAATGGGGATTGAGGAGCAGTTCGCGCAGATGGGGGTTGGATTGGGGCAGAAGCAGCAGGATGAGGGTTTTGTTTTGCTGTCTTCGCCGCCTCCTCCGCCAGTCCCGGCCACCCTCGCCGCCGTGGGTGTACCGATTGGGCCACCGACGATTGTCGCTGGGGATTATCACAACCGTGTTGTCTCTGATGATGAGAGATCCGATCATGGGGTTCCGGTCGGGTATAGAAAGCCTCCCACTCCTCAGCCACAAGTACAGACGCAAGCGCAGTCACAAACACAAACCCTTGCTCCTCAGTTTCAACAGAAGTCAACTGGTGGTAGCGGCGGTGTTGTTGATGTGCCTTCTCCTGATTCAGTTTCAAGTGATAGTAGTCTTGCGAACTCAATTTCGCGTCAGAAACCTGCTGTTTATCAAGAACAAGTTCAGATTCAATCTGGGACTACAAGGGTTCCTAGTAACCCTGTGGATCCGAAGCTCAATGTTTCTGATCCGCACGGTCGGATCCAGATGCAGCAACATGTACAGGACCCTGGATATTTGTTACAACAGCAATTTGAACAGCATCAGCAGACGCAGCAGTTGCCACAACAGCAATTCGAGCAGCACCAGCAAGCGCTGCCACAACAGCAATTCGAGCAGCACCAGCAAGCGCTGCCACAACAGCAGCAACAGTTTATTCATGGCACACATTTCATCCACCATAACCCTGCAATTTCTGCGTATTATCCTGTATATCCTTCCCAGCAACATCCACAGCATCCACAGCAGCCACAGCTTTACTATGTTCATGCGAGGCAACCGCAGGCTTACAACCTACCTGTGCAGCAGGCTAATATGGGTGACTCTGCTGGAAATCTTGCTTCTAGCCGCCCACAAACTCCACCAAATCCTGCTACACTGGTTCCACAATCTGCTGCATACAATCCCATGAGAAATGCTCCCATGCCTAAAACTGAAATGAATGCTTACAGAGCCGCAACTGCAGGCACCCCTCAACTAGTTCAAGTTCCTACAAGCCAGCATCAGCAACAGTACGTCACTTACTCACAGATTCACCATCCATCTCAGTCCATGGCTCCCAATTCTGCTCCCCAGGCGAATTATGGTTTTGATTATGCTGACCCTGCTCATGCTCAAATATACTACTCTCAACCCTTGGCACCCACAATGCCTTCCCAGTACCAGACTATGACTGCTGCTGCTGTGATGATGCAGGAAGGTTCAGCTCAGCATCCCTCGGACAGTTTGAAGCAGCAGATAAGAACCTCACAGCCATTATAA 2148 0.5405 MEAQPPTPSTAPPPPPPHLSYPDSVESSPRSRNTDSWDEPFAPASSKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIIVAERATSLADLSTRLSKTFLNGRTFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTAAAATSVVKPSRIRLFLFPTKPDSTHSIPPQILDTSTKSDDWFLNALNGNGVPNRGFSDSASVNCLVDLDDEVAGNNLEPGSKDVGEGGPGAGVGGGASLGGSFGNGKNLKQDVHSVPDSPMLETTSSFGSTSSSPSLANLPPIRVHVVEDQKVMGIEEQFAQMGVGLGQKQQDEGFVLLSSPPPPPVPATLAAVGVPIGPPTIVAGDYHNRVVSDDERSDHGVPVGYRKPPTPQPQVQTQAQSQTQTLAPQFQQKSTGGSGGVVDVPSPDSVSSDSSLANSISRQKPAVYQEQVQIQSGTTRVPSNPVDPKLNVSDPHGRIQMQQHVQDPGYLLQQQFEQHQQTQQLPQQQFEQHQQALPQQQFEQHQQALPQQQQQFIHGTHFIHHNPAISAYYPVYPSQQHPQHPQQPQLYYVHARQPQAYNLPVQQANMGDSAGNLASSRPQTPPNPATLVPQSAAYNPMRNAPMPKTEMNAYRAATAGTPQLVQVPTSQHQQQYVTYSQIHHPSQSMAPNSAPQANYGFDYADPAHAQIYYSQPLAPTMPSQYQTMTAAAVMMQEGSAQHPSDSLKQQIRTSQPL 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00300 715 MobiDBLite consensus disorder prediction 368 444 - -
Vian3g00300 715 MobiDBLite consensus disorder prediction 254 275 - -
Vian3g00300 715 PANTHER OS05G0427100 PROTEIN-RELATED 20 512 - -
Vian3g00300 715 MobiDBLite consensus disorder prediction 1 22 - -
Vian3g00300 715 SUPERFAMILY CAD & PB1 domains 63 163 - -
Vian3g00300 715 CDD PB1_UP2 51 153 - -
Vian3g00300 715 Gene3D - 67 153 - -
Vian3g00300 715 ProSiteProfiles PB1 domain profile. 47 155 IPR000270 GO:0005515
Vian3g00300 715 SMART PB1_new 62 155 IPR000270 GO:0005515
Vian3g00300 715 Pfam PB1 domain 63 154 IPR000270 GO:0005515
Vian3g00300 715 MobiDBLite consensus disorder prediction 350 453 - -
Vian3g00300 715 MobiDBLite consensus disorder prediction 569 592 - -
Vian3g00300 715 MobiDBLite consensus disorder prediction 693 715 - -
Vian3g00300 715 MobiDBLite consensus disorder prediction 24 40 - -
Vian3g00300 715 MobiDBLite consensus disorder prediction 474 510 - -
Vian3g00300 715 MobiDBLite consensus disorder prediction 210 275 - -
Vian3g00300 715 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00300 Vian-Chr3 2845864 2848232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00300 45 205 MAP Kinase Kinase Kinase AT1G16270 36.095 2.19e-23 104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00300 3 2845864 2848232 Vian3g00300 3 2845864 2848232 ECH
Vian3g00300 3 2845864 2848232 Vian8g01438 8 33750353 33752577 ECH