Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00285 ATGGCCTCTGGTGAAGGGAGGCGGCGTCATCACGATCTTGTGCCTCTTGCCGCATTGCTCAAGAGAGAGATGAAGAGTGAGAAGATGGAAAAGCCTACTGTGAGGTTTGGACATGCAGCTCAGTCCAAGAAAGGGGAGGATTACTTTCTTATTAAGACAGATTGTCAGCGAGTGCCCGGGAACCCTTCATCATCCTTTTCTGTATTTGCGATCTTTGATGGGCATAATGGAAATGCTGCTGCTATTTTTACTAGGGAGAATTTGTTAAATCACGTGTTGAGTGCTCTTCCTCGTGGGCTTGGGCGAGATGAGTGGTTGCATGCTTTACCCAGGGCATTGGTTGCGGGTTTCGTTAAGACCGACAAGGAGTTTCAGAGCCGAGGAGAAACTTCTGGAACCACAGCCACGTTTGTAATAGTGGATAGGTGGACTGTTACTGTTGCATCTGTTGGAGATTCCCGTTGTGTACTAGATGCCCAGGGTGGTGCTATTTCCTCCTTAACTGTTGATCACAGACTTGAAGAGAATATTGAAGAGAGGGAACGTGTAACTGCTAGTGGAGGTGAAGTTGGGAGACTTAGCATAGTTGGTGGTGCAGAGATTGGTCCCCTTCGATGCTGGCCAGGGGGTCTATGCCTTTCTAGGTCAATTGGAGACATGGATGTTGGAGAGTTCATTGTTCCCATACCATATGTCAAACAAGTGAAGCTATCAAAGGCTGGTGGGAGGCTTATAATTGCCTCTGATGGCATATGGGATGCTCTATCATCAGAAATGGCTGCAAAATCTTGTCGAGGTTTGCCTGCGGAACTTGCAGCTATGCAGGTTGTCAAGGAAGCACTACGAACGAGAGGATTAAAGGATGATACAACTTGCATAGTAGTTGACATAATCCCACCTGATAATGAATTGCCACCAACACCTCCCCCCCAAAAGCGGAACAAGCTGAGAGATCTTCTTTCCTTCAGGAAGAGATCCCGTGATTCTGCAAGTAAGCTATCAAAAAAGCTTTCAGCTATAAATATAGTGGAGGAACTGTTTGAAGAAGGATCGGCAATGCTTGCTGAAAGATTAGGAAATGATGACAACTTGAACACGGGGCAATCAACATCTGGTATTTTTGTTTGTGCTGTTTGTCAAGTTGATCTTGCTCCAAGTGAGGGCATTTCTGTGCACGCGGGTTCAATTTTCTCCACCAGCTCCAAACCCTGGCAAGGTCCCTTTCTTTGTTCTGATTGCCGTGATAAGAAGGATGCAATGGAAGGAAAACGTCCAAGTGGAGTTAAGGTCTCATAG 1296 0.463 MASGEGRRRHHDLVPLAALLKREMKSEKMEKPTVRFGHAAQSKKGEDYFLIKTDCQRVPGNPSSSFSVFAIFDGHNGNAAAIFTRENLLNHVLSALPRGLGRDEWLHALPRALVAGFVKTDKEFQSRGETSGTTATFVIVDRWTVTVASVGDSRCVLDAQGGAISSLTVDHRLEENIEERERVTASGGEVGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPYVKQVKLSKAGGRLIIASDGIWDALSSEMAAKSCRGLPAELAAMQVVKEALRTRGLKDDTTCIVVDIIPPDNELPPTPPPQKRNKLRDLLSFRKRSRDSASKLSKKLSAINIVEELFEEGSAMLAERLGNDDNLNTGQSTSGIFVCAVCQVDLAPSEGISVHAGSIFSTSSKPWQGPFLCSDCRDKKDAMEGKRPSGVKVS 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00285 431 SUPERFAMILY PP2C-like 40 297 IPR036457 -
Vian3g00285 431 CDD PP2Cc 36 297 IPR001932 -
Vian3g00285 431 Pfam Protein phosphatase 2C 61 269 IPR001932 -
Vian3g00285 431 Gene3D - 35 301 IPR036457 -
Vian3g00285 431 SMART PP2C_4 27 295 IPR001932 -
Vian3g00285 431 PANTHER PROTEIN PHOSPHATASE 36 296 IPR015655 GO:0004722|GO:0006470
Vian3g00285 431 SMART PP2C_SIG_2 51 297 IPR001932 -
Vian3g00285 431 FunFam probable protein phosphatase 2C 5 35 302 - -
Vian3g00285 431 ProSiteProfiles PPM-type phosphatase domain profile. 28 297 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00285 Vian-Chr3 2682946 2685938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00285 1 430 PP2C-type Phosphatase Gene Family AT1G68410 79.358 0.0 702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00285 3 2682946 2685938 Vian3g00285 3 2682946 2685938 ECH