Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00272 ATGCCGGCGAAGGATGACAGTTCCGACAAGGAGAAGTGTCTCGATCTCTTTCTGAAGATCGGTTTAGACGAGCGCACAGCTCGAAACACCGTCGCGAACAACAAAGTCACGGCCAATCTCACTTCCGTCATCAACGAGGCTGGTGTTACTGATGGATGCAGTCGAACGGTTGGAAATCTTCTTTATACGGTTGCGACGAAGTACCCTGCAAATGCCTTGCCGCATCGTCCAACATTACTACAATACATTGTTTCTTCAAAGGTCAAAGCAACTGCACAGTTAGATGCAGCTTTATCATTTCTTGCTACCACGGGCATGGAGAATCTTGATTTGAAGACATTTGAAGAAGCTTGTGGTGTTGGCATTGAGGTTTCAACAGAAGATATCAACCAAGCTGTCAGTGAAGTTGTTGAGGAGAACAAGGTAACAATTTTGGAGCTTCGCTATCGAACAAATGTGGGTGAGTTGCTTGGCCATGTGCGCAAGAGGCTGCCATGGGGTGACGCAAAAGTTGCCAAGCAACTTGTTGATGCAAAACTATATGAACTACTGGGTGAACGAACAGCAGCAGATGATGAAAAGCCATCTAGAAAGAAGAAGGAGAAACCGGCTAAAGTAGAGGATAAAGCACCTGTTGCCACTCCTGAAAAGTCACCTGAAGAAGATCTTAATCCATATTTAATATTTCCTAACCCAGAGGAAAATTTCAAGGTGCATACTGAGGTGCCTTTTAGTGATGGAAGTATTTTGAGATGTTGTAATACAAGGGCGCTTCTTGACAAACACTTGAAAGCAACAGGTGGAAAAGTTTTGACCCGCTTTCCACCTGAACCAAATGGATATTTGCATATTGGTCATGCAAAAGCCATGTTTATTGATTTTGGATTGGCAAAAGACAGGGATGGAGGTTGTTATCTGAGATATGATGATACAAATCCTGAAGCAGAAAAGAAGGAGTATATTGATCACATTGAAGAAATTGTCCAGTGGATGGGTTGGAAACCATTCAAGATTACTTACACAAGTGATTACTTCCAAGAATTGTATGAATTAGCTGTGGAGCTCATAAAAAGGGGTCATGCGTATGTTGACCATCAGACACCTGATGAGATAAAGGAATATAGGGAGAAGAAAATGAACAGTCCTTGGAGAGACAGACCAATTTCAGAGTCACTGAAGCTCTTTGAGGATATGAAAAGTGGCCTTGTAGAAGAAGGAAAAGCCACGCTTAGAATGAAGCAAGACATGCAGAGTGATAATTACAATATGTATGACCTTATTGCTTATAGAATTAAGCTGTGTACACTTGAATTTGAGACACGTCGAGCATCATATTATTGGTTATTGCATGCGTTAGGCATTTACCAGCCTTATGTATGGGAATATTCAAGATTGAATGTCTCTAACACAGTTATGTCGAAGCGTAAGTTGAATCGTCTAGTTACAGAGAAGTGGGTTGATGGGTGGGATGATCCTCGTTTGATGACACTAGCTGGTTTGCGGCGTAGAGGCATGACGTCCACTGCAATCAATGCTTTTGTTCGAGGAATTGGAATAACTAGAAGTGATGGCACTTTGATTTCCGTTGAACGCCTTGAATACCATGTTAGGGAAGAATTAAACAGAACAGCTCCTCGTGCAATGGTTGTCCTTCATCCTCTCAAGGTTGTTATTACTAATCTTGAAGCCAACTTAGCTATTGAGGTTGATGCAAAGTTATGGCCTGATGCAAAAGCTGATGATGCTTCTGCTTTCTACAAGATTCCATTTTCCAATGTTGTATATATTGAACGTTCGGACTTCCGGATGCAAGATTCGAAAGATTATTATGGTCTAGCTCCTGGGAAATCTGCGATACTCAGATATGCATTTCCTATAAAGTGCACTGAAGTGATTCTAGCTGACGACAATGAGACTATTCTTGAAATTCGAGCTGAGTATGACCCTTCAAAGAAGACAAAGCCTAAGGGGGTTCTCCATTGGGTTTCTCAATCTTCTCCTGGAGTTGATCCACTAAAGAATCCCGCTGAACTTGACAATTGGCTTGGCGATTTAAACCCTAATTCCAAAGTGATAATTCCGGGTGCTTACGGAGTGTCCTCCCTGCGGAATGCGAAAGTTGGGGACAATTTCCAATTTGAACGATTAGGCTACTTCGTAGTTGACCAGGACTCAACTCCAGAAAAACTTGTTTTTAATAGGACTGTCACTTTAAAGGACAGCTATAGCAAAGGTGGAAAATAG 2244 0.4193 MPAKDDSSDKEKCLDLFLKIGLDERTARNTVANNKVTANLTSVINEAGVTDGCSRTVGNLLYTVATKYPANALPHRPTLLQYIVSSKVKATAQLDAALSFLATTGMENLDLKTFEEACGVGIEVSTEDINQAVSEVVEENKVTILELRYRTNVGELLGHVRKRLPWGDAKVAKQLVDAKLYELLGERTAADDEKPSRKKKEKPAKVEDKAPVATPEKSPEEDLNPYLIFPNPEENFKVHTEVPFSDGSILRCCNTRALLDKHLKATGGKVLTRFPPEPNGYLHIGHAKAMFIDFGLAKDRDGGCYLRYDDTNPEAEKKEYIDHIEEIVQWMGWKPFKITYTSDYFQELYELAVELIKRGHAYVDHQTPDEIKEYREKKMNSPWRDRPISESLKLFEDMKSGLVEEGKATLRMKQDMQSDNYNMYDLIAYRIKLCTLEFETRRASYYWLLHALGIYQPYVWEYSRLNVSNTVMSKRKLNRLVTEKWVDGWDDPRLMTLAGLRRRGMTSTAINAFVRGIGITRSDGTLISVERLEYHVREELNRTAPRAMVVLHPLKVVITNLEANLAIEVDAKLWPDAKADDASAFYKIPFSNVVYIERSDFRMQDSKDYYGLAPGKSAILRYAFPIKCTEVILADDNETILEIRAEYDPSKKTKPKGVLHWVSQSSPGVDPLKNPAELDNWLGDLNPNSKVIIPGAYGVSSLRNAKVGDNFQFERLGYFVVDQDSTPEKLVFNRTVTLKDSYSKGGK 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00272 747 FunFam Glutamine--tRNA ligase cytoplasmic 9 122 - -
Vian3g00272 747 FunFam Glutamine--tRNA ligase cytoplasmic 239 433 - -
Vian3g00272 747 Gene3D - 7 122 IPR042558 -
Vian3g00272 747 SUPERFAMILY Ribosomal protein L25-like 544 741 IPR011035 GO:0006412
Vian3g00272 747 Gene3D Ribosomal Protein L25; Chain P 671 740 IPR020056 -
Vian3g00272 747 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 12 168 IPR007639 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Vian3g00272 747 PANTHER GLUTAMINE-TRNA LIGASE 19 432 - -
Vian3g00272 747 Pfam tRNA synthetases class I (E and Q), anti-codon binding domain 544 722 IPR020059 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Vian3g00272 747 Gene3D HUPs 433 547 IPR014729 -
Vian3g00272 747 Gene3D HUPs 249 432 IPR014729 -
Vian3g00272 747 FunFam Glutamine--tRNA ligase cytoplasmic 671 740 - -
Vian3g00272 747 FunFam Glutamine--tRNA ligase 548 667 - -
Vian3g00272 747 Pfam tRNA synthetases class I (E and Q), catalytic domain 269 432 IPR020058 GO:0004812|GO:0005524|GO:0043039
Vian3g00272 747 Pfam tRNA synthetases class I (E and Q), catalytic domain 433 541 IPR020058 GO:0004812|GO:0005524|GO:0043039
Vian3g00272 747 MobiDBLite consensus disorder prediction 189 216 - -
Vian3g00272 747 Gene3D - 123 192 IPR042559 -
Vian3g00272 747 MobiDBLite consensus disorder prediction 189 223 - -
Vian3g00272 747 FunFam Glutamine--tRNA ligase cytoplasmic 124 192 - -
Vian3g00272 747 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 173 242 IPR007638 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Vian3g00272 747 Gene3D Ribosomal Protein L25; Chain P 548 667 IPR020056 -
Vian3g00272 747 SUPERFAMILY Nucleotidylyl transferase 269 550 - -
Vian3g00272 747 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 276 287 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00272 Vian-Chr3 2510896 2519447 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00272 3 2510896 2519447 Vian3g00272 3 2510896 2519447 ECH