Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00257 ATGAGTACGGCAAAGAACGCGGCAAACGCGGTTGGAGGCAAAACCGCAAGAGCATGCGACAGCTGCATAACCAAGCGGGCACGTTGGTACTGTGCTGCCGATGATGCTTTTCTCTGCCAAGCTTGTGACTCTTCGGTTCACTCCGCCAATCCTTTGGCTCGCCGACACGAAAGAGTCCGCTTGAAAACGGCGTCGTACAGGTCCACCGACGAACAACAACAACAACAACCTCCCACGTGGCCCACTAAGAAAGCTCGAACGCCCAGACACGGGAAACACTCTCGTAGCAACAACCCCTTCCATCTGGTCCCGGAAGTGGGTTCGGAAGAGGTGAATTCCCATGACGAGAACGAGGAGCAGCTTCTTTACAGGGTCCCCATATTCGAACCTTTTGTTGCCGAACTATGTGGGAATAACAGCTCTTCTCCTTCTTCGGTGACTTCAACCGATCAAGGAGTAGCAGCTGCTGTGGCCGAGGCCGAAAACAAAGGGGTTGAGAGCAATGTTTTATATCACAGTAATAATGAGATGGAAAACTTGCACGGGATGCTTCCTTCCGATGCAGAACTTGCCGAGTTTGCGGCTGATGTTGAGAATTTACTGGGTAGGGGGCTTGAAAACGAGTGTGTGGGGATGGAGGATCTGGGACTGATTGATGCGAAGGAGGAGGAGTGTTCGGTGGGTAGTGGGGAGGTGAAGGTGGAAGAGGAAGAGAGCCCTGAGATGGAGATGGAGATGGAGATGGAGATGGTGGGAAGAGATGTATCGTTTGAGTTTAGCTTTGATTACGATACGTGCGAAGAGGTGAAGGAGAAGGTTTGTGATTTGGAATTGGGGAAGGAGAATGAAGAAGAACTGAGAGAGAATGATGAGGTGAAAAAGAAGAAGATATCGTTGCAGCTTGATTATGAGGCAGTGATTATCGCCTGGGCTAGCCAAAAGTCTCCCTGGACCACTCCTGACAAGCCAAACTTAGACCCCGACCAGTGCTGGCACGAATGCATCGAAAGTTATGGAAGGGGAATTCATGATTCTTATGGTGAAGTGGGTGGATTTGGGATTCATCCAGTGATAATTGATGGAGGCAGAGAGGCAAGAGTGTCAAGGTACAGAGAAAAGCGGCGAACAAGGTTGTTCTCTAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGACCCAGAATGAAGGGGAGGTTTGTCAAGAGAGCTTCCTTTGCACCATCAACATTTCCCTTGCTAAATCATTAA 1257 0.4932 MSTAKNAANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANPLARRHERVRLKTASYRSTDEQQQQQPPTWPTKKARTPRHGKHSRSNNPFHLVPEVGSEEVNSHDENEEQLLYRVPIFEPFVAELCGNNSSSPSSVTSTDQGVAAAVAEAENKGVESNVLYHSNNEMENLHGMLPSDAELAEFAADVENLLGRGLENECVGMEDLGLIDAKEEECSVGSGEVKVEEEESPEMEMEMEMEMVGRDVSFEFSFDYDTCEEVKEKVCDLELGKENEEELRENDEVKKKKISLQLDYEAVIIAWASQKSPWTTPDKPNLDPDQCWHECIESYGRGIHDSYGEVGGFGIHPVIIDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAPSTFPLLNH 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00257 418 Coils Coil 282 302 - -
Vian3g00257 418 MobiDBLite consensus disorder prediction 64 103 - -
Vian3g00257 418 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Vian3g00257 418 Pfam CCT motif 363 405 IPR010402 GO:0005515
Vian3g00257 418 ProSiteProfiles CCT domain profile. 363 405 IPR010402 GO:0005515
Vian3g00257 418 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
Vian3g00257 418 SMART bboxneu5 14 61 IPR000315 GO:0008270
Vian3g00257 418 MobiDBLite consensus disorder prediction 66 82 - -
Vian3g00257 418 CDD Bbox1_BBX-like 18 61 - -
Vian3g00257 418 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 8 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00257 Vian-Chr3 2322887 2324413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00257 5 405 C2C2-CO-like Transcription Factor Family AT1G25440 46.043 1.88e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vian3g00257 zf-B_box 8.5e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00257 3 2322887 2324413 Vian3g00257 3 2322887 2324413 ECH