Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00255 ATGCCTGAATCTCGGAAACAACTGACTTTTAAACCGAGGCAGAAACCTCACCACTCAGTGCAAGAGTCCAAAGCAATGAGAAAACTACGAATAATTTATAATGATCCTGATGCCACTGATTCATCCGATGATGAGTCAGAGGTGTTTCAGAAATCGAAAAAAGCAAGGAGAAACTTTTGTGAGATCCCTCTTCCACCCCTTCCTCAAACTTTCACCACTCCTGAAACCAATTCCTTTGAGGTGAATAGCAACAGCAATGCAGTGAGGGTGAAGGTTTGCATTGAAGGTCAACCCCAGACAAAAAAGAGGGTTTTGACCCAAACCCCATCAACAAGGAGGAACACTTCTGGGAAATATAGAGGTGTTAGGCAGAGAAAATGGGGTAAATGGGCTGCTGAGATTCGAGATCCTTTTCAGAGTACTCGCATATGGCTTGGTACTTTCAACACAGCGGAAGAGGCTTCTCAAGCCTACGAAGCCAGAAGGCTTGAGTTTGAAGCCAAGGCTAAGGCCAGAGCCTACAAAAATGTTTCAGAGCCTTTGTCCACAACTTCTGATAAGAGCATATGCTGTAACTCTTCTGATGCCGCTGCTGTGTCTGTGTCTGAGAAGTTTTCTACTACCTCTGATGACTCAGACGGTGTGTTGTCACATCCATCACCTTCTTCTGTGCTTGAGTTGGATTCTTCATCTTCCAAACCCATTGACAATGACAATGGTTTGAGTGAGGAAGCTGTTGAGACTAATAATTTGGTTTCTGAATTTGCTGAACTTGAAATTCCAGATTTGAGTCTTTTGAACTTGCCGTCACCATTCATCGGTGCTACTGCTGGTCTTGCATCTGGTACTGAACCAGACTTTGGTATTGATTTTGATTGGCTATCACTTGAGGATTATGGTCAGGGTTTTGATGATTTTGGTGGCTTGGAAGATATTCGTATTTGTGGGTTTGATAACAATGAGCCTAGTAAACTTCCTGATTTTGATTTTGGCGATTTCTGTGCTGAAGAGTTTGCTGGTTGGACCGAGGAGCCCCTCAACATACCTTGTGCCTAA 1056 0.4356 MPESRKQLTFKPRQKPHHSVQESKAMRKLRIIYNDPDATDSSDDESEVFQKSKKARRNFCEIPLPPLPQTFTTPETNSFEVNSNSNAVRVKVCIEGQPQTKKRVLTQTPSTRRNTSGKYRGVRQRKWGKWAAEIRDPFQSTRIWLGTFNTAEEASQAYEARRLEFEAKAKARAYKNVSEPLSTTSDKSICCNSSDAAAVSVSEKFSTTSDDSDGVLSHPSPSSVLELDSSSSKPIDNDNGLSEEAVETNNLVSEFAELEIPDLSLLNLPSPFIGATAGLASGTEPDFGIDFDWLSLEDYGQGFDDFGGLEDIRICGFDNNEPSKLPDFDFGDFCAEEFAGWTEEPLNIPCA 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00255 351 ProSiteProfiles AP2/ERF domain profile. 118 178 IPR001471 GO:0003700|GO:0006355
Vian3g00255 351 Gene3D AP2/ERF domain 117 177 IPR036955 GO:0003700|GO:0006355
Vian3g00255 351 MobiDBLite consensus disorder prediction 206 241 - -
Vian3g00255 351 SUPERFAMILY DNA-binding domain 118 165 IPR016177 GO:0003677
Vian3g00255 351 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
Vian3g00255 351 MobiDBLite consensus disorder prediction 1 27 - -
Vian3g00255 351 CDD AP2 118 165 IPR001471 GO:0003700|GO:0006355
Vian3g00255 351 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Vian3g00255 351 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Vian3g00255 351 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Vian3g00255 351 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00255 Vian-Chr3 2281282 2282337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00255 21 350 AP2-EREBP Transcription Factor Family AT1G68550 33.432 4.62e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vian3g00255 AP2 2.7e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00255 3 2281282 2282337 Vian3g00255 3 2281282 2282337 ECH