Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00246 ATGGCTACCGATGCCCGTGACTCGCGTCACAAGCATCGCCGATCACCCTCCCCAGAGGATGTGGACAGATCCTCGAAGCGCCACAAGCACCGCCATCGCCATCGCCACCGCCACCGTCACGGGAGCAAAAAGCGCGATGAAGATATTGAATTCGACGATCGAACAATTGCTGCTGTTCCTTGTCCAACTCCGCATAGACATGTACAGGAGGACGATGTGGAGGAAGGAGAGATCCTCGACGACGAAGCTCTCGATAGCGAGGTAGGGAAAAAAGAGACTGAATCTGATGTCGAACCTGGTGAAATCAAGGTGACTGGAGATCGAGATGTTCAATCCGATAATCAAAATTCGGGAGACCTCACTGTAAATTCAGAAACTAATGAGGACATCAGGGTTGATAAATTTATTAGTCCTGCAACCAATGCAGATGGTGTCTCTCCTAATCGTTTAAGTGCTGAGACTCAAGATGGAAAGCATGCTACAGATGGTCTGGACAATGGTTATTTGAATCCTAAATCTTCCAGGGCAGATAAGTCGCGGAATGGTGAGCTTGGACATTTTAAAGGGAATGAGAAACTAAAAGGTGACTTTGATGCACTGGAGGCTAATGTTAGGAAAACACATTTCCATAGGAATTCGTCATCCGAAAGTGGGGGAGACAAAGGTAGAATATCAGGAAGTTCTCCTTCTCATGGCAGATATAGAAGTCGATCAAGATCAATTGGTCATACAAGAGACAGGTCTCGTTCTCGTAGTGTCATAGATGAATATGATCATTCCAAGAGAAGGCGCTCTGAATATGACTATGATGAGGAAAGAGTGAGGGCACGTGGAAGGGAACATGGTCATGGAAGTGTGGTAGATGATAGAAGGGAATACAGTAGTGGATATCACAATCGCGAGGCCCATGATAGAGATAGGAGTAGGGATAGAGACTTGTACAGCGAAAAAAAACAAGAGGAAACAAGCAGGGGTAAGGAGATTGAGAGGGACCGCCAAAGGGTAAAGGAACGTGAAAGGAGCCGTGAGAGATATAAAAGGGATGTAGAAAAAGACAGGAGCAGGGAAAGGGAGGATAGGGACAGGAGGCAAGAAAAGGAAAGAGATAGGAGCTGGGAGACGGTGTTTGAGAGGGATATGAGAAGGGAAAAGGAAAGAGATAGGAGTAGGGACAGAACAAGAGATGCTAAGAGAGATAGAGACCTGGAGAATGAAAGGGATGATAAGAATCGAGAAAGGGATAATATTAAGGAGAGGGCAAGGCGTGATGATAGATATAGGCACAAGGATAGAGACACTGCAAATGGTAAAGATAGGCATGTGCGTCATGAAGATGGTAATGACAATGGAGATAAATATAGAAAACATTCGAGACATGAAGAAAATGATTACCATTGGGATAGAAAAAGAAATCCTGGTAATCCTGTAAAGGATTATACTTCAAGGGGGGGAAGTACTGCAGAAGTGGATGAAAGCAAACTAACAAGCAGTGAGGTTGAACCAGATGACTTAGAGGAGGATACATTGCACTTACCTGACCAAGAAGAGGAAGATCTCAACAGGATCAAAGAAGAAAGTAGAAGAAGAAGGGAAGCAATAATGGAGAAATACAAGAAACAGCATCAGCAAGTAGAAGTGGTTGGAAATGAACGAAAAGACAAGGATACAGACAGTCAAACTGAAACCTATGAAGCACATGATGGTAAGAATGATGATGCCGATTATGTGGAGCCATCATTTGCTGTTGGAAAATCTCCTGAAAATGTGACTGTTGCTTCTCAGAAGATATCTCTTGCTGGAGGCCTGGGAGAGGGTACTCCAAAGAGTGAAAGGTCAGAGGACAAGTACTGTGACGATATATTTGGGGAGACACCAACGGGAGTTCGAAAATCAGGAAAAGGTGATGGTTTAATGATTGAAAGGGTTGGCCTACATGACAACTGGGATGATGCAGAGGGATACTACAGCTATCGAATTGGTGAAATACTTGATGGCCGGTATGAAGTCACTGCTGCACACGGGAGGGGTGTCTTTTCAACAGTTGTTCGGGCAAAGAATCTGAAGGTGGGAAATGGTGAGCCAGAGGAAGTAGCAATAAAAATAATTCGTAATAATGACACCATGTACAAGGCTGGTATGGATGAATTGGTCATATTGAAGAAATTAGTAGGTGCAGATCCAGATGATAAACGTCATTGTGTTCGTTTCCTTTCAAGTTTTAGATACAGGAATCATCTTTGTTTAGTTTTTGAATCTCTTAATATGAATCTCCGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTTAGGCTAACAGCTGTGAGAGCATACGCAAAACAGCTTTTTATTGCCTTGAAGCATCTCCGGAACTGTGGTGTTCTTCATTGTGACATAAAGCCAGATAATATGTTGGTAAATGAGGCTAAAAATGTTTTGAAGCTTTGTGACTTTGGTAATGCAATGTTTGCTGGTAAAAATGAAGTTACACCATATCTTGTGAGTCGTTTTTATCGTGCCCCAGAAATAATACTTGGCTTGGCATATGATCATCCATTGGATATTTGGTCTGTAGGCTGTTGTTTGTATGAGTTATATGTAGGTAAGGTTCTTTTCCCTGGGCTTACTAACAATGACATGCTACGACTTCACATGGAACTGAAGGGCCCTTTTCCAAAGAAGATGCTACGAAAGGGAGCATTTACTGAACAACATTTTGATCAGGACCTGAATTTTCTTGCAACAGAGGAAGATCCTGTGACAAAAAAGGCCATAAAGCGGCTGATTCTCAACATTAAGCCAAAAGATATTGGGACACTCATCACTGGCTCTTCCGGGGAGGATCCAAAAATGTTGGCCAACTTTAGGGATCTTTTGGAAAAAGTTTTTGTCCTGGATCCAGACAAGAGGCTGACAGTGTCACAAGCTCTGAACCACCCATTCATCACTGGCAAGTGA 2958 0.4317 MATDARDSRHKHRRSPSPEDVDRSSKRHKHRHRHRHRHRHGSKKRDEDIEFDDRTIAAVPCPTPHRHVQEDDVEEGEILDDEALDSEVGKKETESDVEPGEIKVTGDRDVQSDNQNSGDLTVNSETNEDIRVDKFISPATNADGVSPNRLSAETQDGKHATDGLDNGYLNPKSSRADKSRNGELGHFKGNEKLKGDFDALEANVRKTHFHRNSSSESGGDKGRISGSSPSHGRYRSRSRSIGHTRDRSRSRSVIDEYDHSKRRRSEYDYDEERVRARGREHGHGSVVDDRREYSSGYHNREAHDRDRSRDRDLYSEKKQEETSRGKEIERDRQRVKERERSRERYKRDVEKDRSREREDRDRRQEKERDRSWETVFERDMRREKERDRSRDRTRDAKRDRDLENERDDKNRERDNIKERARRDDRYRHKDRDTANGKDRHVRHEDGNDNGDKYRKHSRHEENDYHWDRKRNPGNPVKDYTSRGGSTAEVDESKLTSSEVEPDDLEEDTLHLPDQEEEDLNRIKEESRRRREAIMEKYKKQHQQVEVVGNERKDKDTDSQTETYEAHDGKNDDADYVEPSFAVGKSPENVTVASQKISLAGGLGEGTPKSERSEDKYCDDIFGETPTGVRKSGKGDGLMIERVGLHDNWDDAEGYYSYRIGEILDGRYEVTAAHGRGVFSTVVRAKNLKVGNGEPEEVAIKIIRNNDTMYKAGMDELVILKKLVGADPDDKRHCVRFLSSFRYRNHLCLVFESLNMNLREVLKKFGRNIGLRLTAVRAYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLAYDHPLDIWSVGCCLYELYVGKVLFPGLTNNDMLRLHMELKGPFPKKMLRKGAFTEQHFDQDLNFLATEEDPVTKKAIKRLILNIKPKDIGTLITGSSGEDPKMLANFRDLLEKVFVLDPDKRLTVSQALNHPFITGK 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00246 985 MobiDBLite consensus disorder prediction 83 108 - -
Vian3g00246 985 MobiDBLite consensus disorder prediction 218 235 - -
Vian3g00246 985 CDD STKc_PRP4 666 982 IPR044092 GO:0004674|GO:0006468|GO:0045292
Vian3g00246 985 SMART serkin_6 667 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00246 985 PANTHER DUAL SPECIFICITY PROTEIN KINASE 368 983 - -
Vian3g00246 985 MobiDBLite consensus disorder prediction 478 492 - -
Vian3g00246 985 MobiDBLite consensus disorder prediction 1 573 - -
Vian3g00246 985 Coils Coil 399 422 - -
Vian3g00246 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 794 806 IPR008271 GO:0004672|GO:0006468
Vian3g00246 985 MobiDBLite consensus disorder prediction 176 217 - -
Vian3g00246 985 Gene3D Phosphorylase Kinase; domain 1 637 726 - -
Vian3g00246 985 MobiDBLite consensus disorder prediction 514 573 - -
Vian3g00246 985 MobiDBLite consensus disorder prediction 109 125 - -
Vian3g00246 985 FunFam serine/threonine-protein kinase PRP4 homolog 637 726 - -
Vian3g00246 985 MobiDBLite consensus disorder prediction 26 42 - -
Vian3g00246 985 Pfam Protein kinase domain 669 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00246 985 Coils Coil 328 348 - -
Vian3g00246 985 Gene3D Transferase(Phosphotransferase) domain 1 727 983 - -
Vian3g00246 985 ProSiteProfiles Protein kinase domain profile. 667 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian3g00246 985 SUPERFAMILY Protein kinase-like (PK-like) 654 984 IPR011009 -
Vian3g00246 985 MobiDBLite consensus disorder prediction 239 475 - -
Vian3g00246 985 MobiDBLite consensus disorder prediction 1 25 - -
Vian3g00246 985 FunFam Serine/threonine-protein kinase PRP4 homolog 727 983 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00246 Vian-Chr3 2173588 2179462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00246 674 983 MAP Kinase Gene Family AT4G01370 33.856 2.73e-27 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Vian3g00246 Pkinase 5.7e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00246 3 2173588 2179462 Vian3g00246 3 2173588 2179462 ECH