Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian3g00241 ATGCAAAGCTTCAACCCAACCGAATCAGAATCAACCTCGCCACTCTATTCCCACTCTTCCTTCATTCACCGGGGAAATGACGCCAACCCAAATCCCACGCGCTTCTCTGATCTTCAGCATTCTTTTCGGCAGCACGATGCTGTTGATTTAAGCTCAAGTTCTGTGTTTGGTGCGAAGTCGAACAATATGGCTGTTGTTGCAAGCAACTTGCAGTGTGGGACATTCAACACGAACCTTGGAGGTGCAGAGTTTGGTTCGACGGTTGTAGGGTGTGTTGAGACAGAGTCTCAACACATGTATCAGAGAGGAAACTGTAGCGCCACCATGCCCATGGGGAACCAGTATGTTGAGAAATGGGCAGATGATAGCCAACACACTGAAGATACTTGCACAGACATCGACACCGATGATAAAAACCAATGTTTCTCTACCGTGTCTTGGGGCAATGGAGTTGGAGACGGGGCACTTGTAGTTGTGGACTCCCAGGATCAAAGTAAGACAAAGGTTAAACCCGAAGACCAGAAGACCGTTCGTAGGCTAGCTCAGAATCGCGAGGCAGCTAGGAAGAGTCGGCTGAGGAAAAAGGCATATGTGCAACAGTTGGAGAGCAGTCGAGTTAGGCTTGCACAATTAGAACAAGAGCTTCAACGGGCACGTCAGCAGGGTGTTCTTATTGCAAATGGACTCACTGCGGAACGAGGACATTCAGTTGTTGGAAATGGAGCGTTAGCATTTGACATGGACTATGTTCGATGGGTGGATGAGCATCAAAGGCTGATCAATGATCTAAGATCAGCTATAAATTCTCGAATGGGTGATAATGAACTTTATGTTCTTGTTGATGGAGTCATGGCACATTACGATGAATTATTCAGGTTGAAGAGCATAGGGGCAAAGGCTGATGTATTTCATATACTTTCTGGGATGTGGAAGACTCCTGCAGAAAGATGCTTCATATGGCTAGGTGGATTTCGTTCTTCTGAACTTCTCAAGATAGTTAGAAACCAGCTTGAACCATTAACGGAAGAGCAGTTGATGGGCATTTACAATCTGCAACAGTCTTCCCAGCAAGCTGAGGATGCATTATCACAAGGCATGGAAGCATTGCAGCAGTCTCTTTCAGATACACTTTCAACCTCCTCACAGGGATCATCTGGTTCTGGAAATGTTGCCGAGTACATGGGTCAAATGGCAATTGCATTAGGCAAGCTTGCCACACTTGAGAGTTTCCTTCATCAGGCTGATCTCTTGAGGCAACAAACTCTGCAACAGATGAGACGAATTCTGACCACTTTCCAAGCTGCGCGGGCACTACTTGTCATAAATGATTACGTTTCACGACTCAGAGCTCTTAATTCTCTATGGTTAGCGTGCCCAAGAGAGTACTAG 1389 0.4622 MQSFNPTESESTSPLYSHSSFIHRGNDANPNPTRFSDLQHSFRQHDAVDLSSSSVFGAKSNNMAVVASNLQCGTFNTNLGGAEFGSTVVGCVETESQHMYQRGNCSATMPMGNQYVEKWADDSQHTEDTCTDIDTDDKNQCFSTVSWGNGVGDGALVVVDSQDQSKTKVKPEDQKTVRRLAQNREAARKSRLRKKAYVQQLESSRVRLAQLEQELQRARQQGVLIANGLTAERGHSVVGNGALAFDMDYVRWVDEHQRLINDLRSAINSRMGDNELYVLVDGVMAHYDELFRLKSIGAKADVFHILSGMWKTPAERCFIWLGGFRSSELLKIVRNQLEPLTEEQLMGIYNLQQSSQQAEDALSQGMEALQQSLSDTLSTSSQGSSGSGNVAEYMGQMAIALGKLATLESFLHQADLLRQQTLQQMRRILTTFQAARALLVINDYVSRLRALNSLWLACPREY 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian3g00241 462 Pfam bZIP transcription factor 175 214 IPR004827 GO:0003700|GO:0006355
Vian3g00241 462 CDD bZIP_HBP1b-like 175 222 - -
Vian3g00241 462 FunFam BZIP family transcription factor 174 223 - -
Vian3g00241 462 Gene3D - 174 224 - -
Vian3g00241 462 PANTHER TRANSCRIPTION FACTOR TGA9 100 461 - -
Vian3g00241 462 SMART brlzneu 171 242 IPR004827 GO:0003700|GO:0006355
Vian3g00241 462 Coils Coil 194 221 - -
Vian3g00241 462 ProSiteProfiles DOG1 domain profile. 242 458 IPR025422 GO:0006351|GO:0043565
Vian3g00241 462 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 173 217 IPR004827 GO:0003700|GO:0006355
Vian3g00241 462 Pfam Seed dormancy control 260 334 IPR025422 GO:0006351|GO:0043565
Vian3g00241 462 MobiDBLite consensus disorder prediction 1 36 - -
Vian3g00241 462 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 178 193 IPR004827 GO:0003700|GO:0006355
Vian3g00241 462 SUPERFAMILY Leucine zipper domain 175 218 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian3g00241 Vian-Chr3 2135739 2138961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian3g00241 12 461 bZIP Transcription Factor Family AT1G68640 54.839 3.98e-155 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vian3g00241 DOG1 3e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian3g00241 3 2135739 2138961 Vian3g00241 3 2135739 2138961 ECH