Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g03080 ATGGCCCACCCTTTGGAGAGAGGCTTATCTCCCCCTTGGTGGCCCACTGAAGAGGAAGTTTGGTGGGTTTGCGCTTTCCGGCTCCTGGGACGGCGAGCTCCGCCTCTGGGACCTTGCAGCCGGCACCTCCGCGCGCCGTTTTGTTGGACACACCAAGGACGTCCTCTTTATGGCGTCCTCACGAACTGCAAGCTGAGAAATACCCTTGCTGGACACAGTGGGTATGTGAACACTGTTGCTGTTTCTCCCGATGGTTCTCTGTGTGCCAGTGGTGGAAAAGATGGAGTTATTTTGCTGTGGCATTTGGTTGAGGGTATTCAAAAACAATTTGATGATGCAAGACTCTCCTCAAACTTATCCAAAATCTATGGGTTTGGGTGTTTCTAA 387 0.5194 MAHPLERGLSPPWWPTEEEVWWVCAFRLLGRRAPPLGPCSRHLRAPFCWTHQGRPLYGVLTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWHLVEGIQKQFDDARLSSNLSKIYGFGCF 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g03080 128 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 60 105 IPR045223 GO:0043022|GO:0045182
Vian2g03080 128 Pfam WD domain, G-beta repeat 66 100 IPR001680 GO:0005515
Vian2g03080 128 Gene3D - 1 45 IPR023278 GO:0003700|GO:0005634
Vian2g03080 128 SMART WD40_4 62 101 IPR001680 GO:0005515
Vian2g03080 128 ProSiteProfiles Trp-Asp (WD) repeats profile. 69 102 IPR001680 GO:0005515
Vian2g03080 128 SUPERFAMILY DNA-binding domain of EIN3-like 3 29 IPR023278 GO:0003700|GO:0005634
Vian2g03080 128 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 69 102 - -
Vian2g03080 128 SUPERFAMILY WD40 repeat-like 62 105 IPR036322 GO:0005515
Vian2g03080 128 Gene3D - 59 122 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g03080 Vian-Chr2 51370923 51383136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g03080 4 22 EIL Transcription Factor Family AT5G10120 68.421 5.38e-07 45.4