Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02659 ATGAAGAGGAATTTCCGAGACAACTGCGCCGGAGGAGCTGTCAAGGGTGAGTGCTCCTCAATGCCCAACGGCAAGGCCAAGATGTGGGAGGAAGACCGCCACCAGCAGGGAGGAGGGATGGATGAGTTGCTCGCGGCGTTGGGCTACAAGGTTCGTGCTTCCGACATGGCAGACGTCGCACAGAAGCTTGAGCAGTTGGAGATGGTCATGGGGAGTGCCCAGGAAGAGGGAATTTCCCACCTCGCTTCCGACACCGTTCACTATGACCCTACGGATCTCCATTCATGGGTCCAAAGCATGTTGGCCGAACTCAACCCCGAACCCACCAACACCATCCTCGATCCCTCCTCCTTCTTGATCGAAAACCCCTCCCACTCTTCCTCCATCCTCACCTCCAACTCACGCGTTTTCAACGACGACTCCGAATATGACCTCAGAGCCATTCCTGGAATAGCCGCATACCCTCCTCAAAACACCACAAACAACAACCCCACTGTTCACACCACCACTGCCACAACCACCACCACTAGCACCAAAGCCGTGGAAGAAATCGAAACGACCACCAACAAGCGCCTCAAGGCTTCCCCAATTGAATCCTCAGAGTCCGCTTCGGAGCCCACGCGCCCTGTAGTCCTCGTTGACTCGCAGGAAGCCGGCGTGCGTTTGGTCCACACTCTCATGGCGTGCGCGGAGGCCGTCCAGCAGGAGAATCTGAAGCTGGCGGACGCACTGGTAAAGCACGTTGGCATACTGGCTTCGTCTCAAGCCGGCGCCATGAGGAAAGTGGCGTCGTACTTCGCCCAGGCCCTGGCGCGTCGAATCTACGGCATCTTCCCGGAGGAAACCCTCGATTCCTCCTTCTCCGACCTTCTCCACATGCACTTCTACGAGTCCTGCCCCTATCTGAAGTTCGCACACTTCACCGCCAACCAGGCCATTCTCGAGGCCTTCACCACCGCTGGGAGAGTCCACGTCATCGATTTCGGCCTCAAACAGGGGATGCAGTGGCCCGCCCTCATGCAGGCCCTCGCATTGCGCCCTGGCGGTCCCCCAACTTTCCGCCTAACCGGAATCGGCCCCCCGCAGCCCGACAACACTGACGCGCTGCAGCAAGTGGGCTGGAAGTTGGCCCAGTTAGCCCACACCATCGGCGTCCAGTTCGAATTCCGCGGATTCGTCTGCAGCAGCCTTGCAGATCTCGACCCAAACATGCTAGAGATCCGTCCCGGAGAAGCCGTGGCTGTCAACTCCGTCTTCGAGCTCCATCGCATGCTGGCCCGACCCGGATCCGTCGACAAGGTCATGGACACAGTGAAAAAGCTCAACCCCAAAATCGTAACCATCGTGGAGCAAGAAGCGAACCACAACGGACCGGTTTTCTTGGACCGGTTCACTGAAGCCTTGCATTACTACTCGAGTCTCTTTGACTCGCTGGAGGGTTCTTCCTCCTCCAACGGGTTGGGTTCGCCGAATCAGGATCTGTTGATGTCGGAGTTGTACCTTGGGAAACAGATATGCAACGTGGTGGCCTATGAAGGCGTGGAGCGCGTGGAGCGTCACGAGACTCTGAGTCAGTGGAGGGGAAGAATGAGTTCGGCCGGGTTCGACCCGGTTCATCTCGGGTCTAACGCGTTTAAGCAAGCTAGTATGTTGCTGGCTCTATTCGCAGGCGGTGATGGGTACAGAGTGGAGGAGAATAACGGCTGCCTCATGCTTGGGTGGCACACTAGGCCACTCATCGCCACCTCCGCATGGAAGCTTCCCGCGCCCGAGTCCTAG 1779 0.5801 MKRNFRDNCAGGAVKGECSSMPNGKAKMWEEDRHQQGGGMDELLAALGYKVRASDMADVAQKLEQLEMVMGSAQEEGISHLASDTVHYDPTDLHSWVQSMLAELNPEPTNTILDPSSFLIENPSHSSSILTSNSRVFNDDSEYDLRAIPGIAAYPPQNTTNNNPTVHTTTATTTTTSTKAVEEIETTTNKRLKASPIESSESASEPTRPVVLVDSQEAGVRLVHTLMACAEAVQQENLKLADALVKHVGILASSQAGAMRKVASYFAQALARRIYGIFPEETLDSSFSDLLHMHFYESCPYLKFAHFTANQAILEAFTTAGRVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQPDNTDALQQVGWKLAQLAHTIGVQFEFRGFVCSSLADLDPNMLEIRPGEAVAVNSVFELHRMLARPGSVDKVMDTVKKLNPKIVTIVEQEANHNGPVFLDRFTEALHYYSSLFDSLEGSSSSNGLGSPNQDLLMSELYLGKQICNVVAYEGVERVERHETLSQWRGRMSSAGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWKLPAPES 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02659 592 FunFam DELLA protein GAI 39 104 - -
Vian2g02659 592 Pfam GRAS domain family 222 586 IPR005202 -
Vian2g02659 592 SMART DELLA_2 41 114 - -
Vian2g02659 592 MobiDBLite consensus disorder prediction 154 180 - -
Vian2g02659 592 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 179 582 IPR005202 -
Vian2g02659 592 Gene3D - 39 104 IPR038088 -
Vian2g02659 592 ProSiteProfiles GRAS family profile. 213 586 IPR005202 -
Vian2g02659 592 Coils Coil 56 76 - -
Vian2g02659 592 Pfam Transcriptional regulator DELLA protein N terminal 41 108 IPR021914 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02659 Vian-Chr2 47416044 47417822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02659 42 587 GRAS Transcription Factor Family AT3G03450 63.538 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian2g02659 GRAS 1.4e-138 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02659 2 47416044 47417822 Vian2g02659 2 47416044 47417822 ECH
Vian2g02659 2 47416044 47417822 Vian7g01686 7 26463139 26464794 PCT