Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g02563 ATGGAGAGAGGGTGGAAGGCTAACAGTGTTGAGATTTCACCAAATTGTCCTAGGTGTGGTTCTTCCAACACCAAGTTCTGCTATTACAATAACTACAGTTCAACTCAACCACGGTACTTTTGCAAGGGCTGCAGAAGGTACTGGACCAAAGGAGGATCCCTCCGCAACGTACCAATTGGTGGTGGCTGCCGGAAAAGTAGAAGGGGTAAATATAATAAGGCCCTAAGACAAGCCCATGGCCCAGTTGGGCATTCTGATGATTTAAGGCCTTCATCTTCAGTGGTGTCTGATGGGCCAAATATTGATCTTGCGCAAGTCTATGCAAGTTTTCTCAATGTGAAGCCAGATCAAGTGCAAACAGTTTGCTCTCCTTCTCCTGAGTATTCAAGCATAGTTAACACTGATTTTGGCCACAGTGTTTTGTCTGAAGAGCATCATGGTCTTACTGGGCGTTTGCATTTTCATGAACAGCCCAGAGAATCCCATTTTGGTGAGGATATCGAAATGTACTTTTGCGGGTTGAACTCTATCCAGAAGCATCAGAAGTATAGTAGCAGTCATGATACAACGGTTACAAAAACAAATTTTGAGTTGCCTCCATTACCAGGTGAAGTTGCAGAAACCTCACATGGCAATGTGTTGTGGTCCAATTCTGAGATGATGGTAGATCATGCTTTGCAAGCCACCCAATGGCCCCTTCTTGGACCAGAAGCTTATGATGCAGACTTCTTAATGGGTAACTGTTGGAGCCACTTCGATTTTCCAAGGGATGCTTCTTTTTCCATGCCTTGA 792 0.4457 MERGWKANSVEISPNCPRCGSSNTKFCYYNNYSSTQPRYFCKGCRRYWTKGGSLRNVPIGGGCRKSRRGKYNKALRQAHGPVGHSDDLRPSSSVVSDGPNIDLAQVYASFLNVKPDQVQTVCSPSPEYSSIVNTDFGHSVLSEEHHGLTGRLHFHEQPRESHFGEDIEMYFCGLNSIQKHQKYSSSHDTTVTKTNFELPPLPGEVAETSHGNVLWSNSEMMVDHALQATQWPLLGPEAYDADFLMGNCWSHFDFPRDASFSMP 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g02563 263 Pfam Dof domain, zinc finger 15 68 IPR003851 GO:0003677|GO:0006355
Vian2g02563 263 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 170 IPR045174 GO:0003700|GO:0006355
Vian2g02563 263 ProSitePatterns Zinc finger Dof-type signature. 16 52 IPR003851 GO:0003677|GO:0006355
Vian2g02563 263 ProSiteProfiles Zinc finger Dof-type profile. 14 68 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g02563 Vian-Chr2 46323540 46324331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g02563 5 258 C2C2-Dof Transcription Factor Family AT3G52440 39.552 3.55e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian2g02563 zf-Dof 1.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g02563 - - gmx:778109 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02563 2 46323540 46324331 Vian2g02563 2 46323540 46324331 ECH
Vian2g02563 2 46323540 46324331 Vian3g02615 3 40624456 40625346 PCT