Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01745 ATGGAAACGTGCCGCCGCTACTGGACCAAAGGTGGCGCTCTCCGCAACGTTCCCATCGGCGGCGGCTGCCGGAAAAACAAAAATATCGGCGTGGCGAACTCAGTAGCAAAGACAGCCTCAACCAAGATGAAAGTCGTTGCATCTGAGAGTGGATCTGGAGCGGATCTGTAG 171 0.5556 METCRRYWTKGGALRNVPIGGGCRKNKNIGVANSVAKTASTKMKVVASESGSGADL 56
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01745 56 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 3 41 IPR045174 GO:0003700|GO:0006355
Vian2g01745 56 Pfam Dof domain, zinc finger 3 28 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01745 Vian-Chr2 35558691 35560006 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01745 2 50 C2C2-Dof Transcription Factor Family AT4G21050 46.000 3.79e-12 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian2g01745 zf-Dof 9.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01745 - - var:108339373 102.064