Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g01207 ATGGTTTATACTTCCATCCCAGCATATATTGATCCAGCCAACTGGCAGCAACAGCACCCAAATCATCAGCAGCAACCCAACAACACTGCTGTCAGCTCCCACCTTATTCTTCCACCACCAATACAACCGCCGCCGCCGCCTCCACCATCGCAACCCCATGGACTCGGTGGTAGTGCCACTGCCGGCTCCATCAGGCCCGGTTCCATGGCGGATAGAGCCAGGATGGCCAACATACCCATGCAGGAAGCTCAACAGAAGTGTCCAAGATGTGACTCCAGCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCCCGCCACTTCTGCAAGGCTTGCAGAAGGTACTGGACTCGTGGCGGGGCCTTGAGGAACGTCCCTGTTGGTGGCGGCTGCCGGAGGAACAAGAGGAGCAGAGGAAGCTCCGGCAGCAGCGCCAGGTCGCCTGCAAACTCGGATCGCCAAACGGCGAGTGCCGGCTCCGCTTCCACAACCAGTGGCTCCTCTTCTGCTGACATGGTGGCAGGCCTTGGCGGCACCGGAGTGCCGTCGTCTCTTAGATTCATGGCTCCATTGCATCATCTTGGCGATCACCACCTCGGTGGTGGTGGTGGTGGTGGTGGAGGAGAGATAGGATTAAACTATGGTTTGAACTATGGGTCGATTTCAGGTCCAATGGGAGGAATAGGGGACTTGAATTTCCATATTGGAAACGCTTTGAATGGTGGTGGTGGTTCTGTGTTGTCTGGTTTGGACCAATGGAGGATGCCACAAACTCACCAATTTCCCTTCTTGTCTGGTTTGGAAGCTTCTTCATCGCATGGGTTGTACTCATTTGATGGTGCTAGTGGTAGTGATGGCTATGGTGGCACTCCCATTAAGGTTTCGACTTCTGGGGTGATGTCTCAGTTTGCTTCTGTCAAAATGGAAGATAATCATCAGGAACTTGGTTTGCCTAGACAGTTCTTGGGAGTCAACAATAACCCTAATACAAATGAACAATATTGGAGTGGTGGTGCTGGTGCTGGTGGTGCTACTTCTGCTTGGACTGATCTTTCTGCTTTCAGCTCTTCTTCCACTACTAGTAATCCCCTATAG 1104 0.5236 MVYTSIPAYIDPANWQQQHPNHQQQPNNTAVSSHLILPPPIQPPPPPPPSQPHGLGGSATAGSIRPGSMADRARMANIPMQEAQQKCPRCDSSNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSRGSSGSSARSPANSDRQTASAGSASTTSGSSSADMVAGLGGTGVPSSLRFMAPLHHLGDHHLGGGGGGGGGEIGLNYGLNYGSISGPMGGIGDLNFHIGNALNGGGGSVLSGLDQWRMPQTHQFPFLSGLEASSSHGLYSFDGASGSDGYGGTPIKVSTSGVMSQFASVKMEDNHQELGLPRQFLGVNNNPNTNEQYWSGGAGAGGATSAWTDLSAFSSSSTTSNPL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g01207 367 ProSitePatterns Zinc finger Dof-type signature. 87 123 IPR003851 GO:0003677|GO:0006355
Vian2g01207 367 MobiDBLite consensus disorder prediction 129 178 - -
Vian2g01207 367 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 57 167 IPR045174 GO:0003700|GO:0006355
Vian2g01207 367 MobiDBLite consensus disorder prediction 37 53 - -
Vian2g01207 367 ProSiteProfiles Zinc finger Dof-type profile. 85 139 IPR003851 GO:0003677|GO:0006355
Vian2g01207 367 MobiDBLite consensus disorder prediction 17 66 - -
Vian2g01207 367 MobiDBLite consensus disorder prediction 139 175 - -
Vian2g01207 367 Pfam Dof domain, zinc finger 84 139 IPR003851 GO:0003677|GO:0006355
Vian2g01207 367 MobiDBLite consensus disorder prediction 17 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g01207 Vian-Chr2 24606994 24608265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g01207 1 360 C2C2-Dof Transcription Factor Family AT2G37590 40.053 2.73e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian2g01207 zf-Dof 4.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g01207 - - gmx:100796820 528.094