Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00270 ATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACCTTTGCAAAGAGGAGAAATGGCCTTCTCAAGAAAGCCTATGAGCTATCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGCAGCAGCACTAGAAACCTTCTAGGGGAAGACTTGGGTCCACTGAATACCAAAGAACTTGAGCAGCTTGAACGGCAATTGGATTCTTCTCTAAAGCAAGTGAGGTCCACCAAGACACAATTCATGCTGGATCAGTTGGCTGATCTTCAAAACAAGGAGCAGATGTTGGTAGAAGCAAACAGATCCTTGACAATGAAGCTGGAAGAAATCAACTCAAGAAATCACTACAGGCAATCATGGGAAGCTGGTGATCAAAGTATGCAATATGGTGGTCCACAGAATTCTCAGTCTCAGGGCTTCTTCCAGCCACTGGAATGCAATCCCACCTTGCAGATTGGTCCTGATTACAGGTACAATGTTGTCGCTTCAGATCAGATAACTGCAACAACTCCAGCTCAACAAGTGAGTGGCTTTATTCCAGGGTGGATGCTTTGA 606 0.4571 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSTRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEQMLVEANRSLTMKLEEINSRNHYRQSWEAGDQSMQYGGPQNSQSQGFFQPLECNPTLQIGPDYRYNVVASDQITATTPAQQVSGFIPGWML 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00270 201 Coils Coil 77 97 - -
Vian2g00270 201 CDD MADS_MEF2_like 2 65 IPR033896 GO:0000977|GO:0045944
Vian2g00270 201 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 136 - -
Vian2g00270 201 Pfam K-box region 59 124 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian2g00270 201 ProSiteProfiles K-box domain profile. 40 130 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian2g00270 201 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian2g00270 201 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian2g00270 201 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Vian2g00270 201 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian2g00270 201 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian2g00270 201 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian2g00270 201 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vian2g00270 201 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vian2g00270 201 SUPERFAMILY SRF-like 2 62 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00270 Vian-Chr2 2813126 2818337 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vian2g00270 K-box 6.8e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00270 2 2813126 2818337 Vian2g00270 2 2813126 2818337 ECH
Vian2g00270 2 2813126 2818337 Vian1g00852 1 8878666 8883063 ECH
Vian2g00270 2 2813126 2818337 Vian4g00589 4 7057016 7064323 ECH
Vian8g00442 8 7430948 7435347 Vian2g00270 2 2813126 2818337 PCT