Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00269 ATGGGAAGGGGTAGGGTTCAGCTCAAACGGATCGAGAACAAAACAAGCCAGCAAGTCACCTTTTCCAAACGGAGAACGGGACTTCTCAAGAAAGCCAACGAAATCTCTGTGCTCTGTGATGCTCAAGTCGCTCTGATTATGTTCTCTACCAAAGGCAAGCTTTTTGAGTATTCCTCCGAACGCAGCATGGAAGATGTCTTGGAACGTTACGAGAGATATACTCATACAGCACTCACTGGAACCAACAATGACTCGCAGGGCAATTGGTCTTTCGAATATATCAAGCTCACTGCAAAAGTTGAAGTCTTGGAGAGGAACGTAAGGAATTTCATGGGAAATGGGCTGGATCCCTTGAGTTTGAAAGAGCTTCAGAGTTTGGAGCAGCAGCTTGACACATCTCTGAAGCGCATCCGAACAAGAAAGAATCAAGTTATGAATCAATCTATCTCAGAGCTGCATAAAAGGGCAAGAACATTACAAGAGCAAAACAGCAAGCTAGCAAAGATGAAAGAGAAAGGGAAGACATTGACTGAACGTCCACAGAGTGTACCAGAAACTCTTGGCCAAAATTCAACCAATCTCAACTTAGCTTCTCCACAGCTATTACCACCACAAAGACTTGTTCCTTCTTTAACTCTCAGTGGGCCATTGCAAGGAAGAGCAACGATGGAGGAAATGGGTGAAGCTCAAACAGTGCCAACTGGCAATTCACTCATCCCACCATGGATGCTGCATATCTGA 741 0.448 MGRGRVQLKRIENKTSQQVTFSKRRTGLLKKANEISVLCDAQVALIMFSTKGKLFEYSSERSMEDVLERYERYTHTALTGTNNDSQGNWSFEYIKLTAKVEVLERNVRNFMGNGLDPLSLKELQSLEQQLDTSLKRIRTRKNQVMNQSISELHKRARTLQEQNSKLAKMKEKGKTLTERPQSVPETLGQNSTNLNLASPQLLPPQRLVPSLTLSGPLQGRATMEEMGEAQTVPTGNSLIPPWMLHI 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00269 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian2g00269 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian2g00269 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian2g00269 246 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Vian2g00269 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Vian2g00269 246 MobiDBLite consensus disorder prediction 179 201 - -
Vian2g00269 246 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Vian2g00269 246 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian2g00269 246 Coils Coil 123 179 - -
Vian2g00269 246 MobiDBLite consensus disorder prediction 168 201 - -
Vian2g00269 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian2g00269 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian2g00269 246 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Vian2g00269 246 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Vian2g00269 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vian2g00269 246 Pfam K-box region 83 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00269 Vian-Chr2 2790758 2797274 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vian2g00269 K-box 1.4e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00269 2 2790758 2797274 Vian2g00269 2 2790758 2797274 ECH
Vian2g00269 2 2790758 2797274 Vian8g00444 8 7476439 7496633 PCT