Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04081 ATGTTGCATGTCTCTGAACCTGATATCATACACTTGTTAGAAAATGTTGAAGTAGAAGTTGAAAATGTGACGCCTGATATTGGTGAGGCAGTAGGTATTTATGAGGGTGAATCTGAAAATGAAGGTTATGGTCAGTTTGAACAACAAGGTAATGGTGAGTGTGAAAAGGAAGGTGGTGGTCAGTGTGAACAAAAAGATGGTGAGTGTGAAAATGATGGTGAGTGTGAACAACAGACTGAAATAGTAGGTGAAGATAATGTTCCTGTTGAAGAAGAAAGATGTGAGGGTGATGGTGTTGTTGAAGGTGAAATTGAAACCCAGTTTGATGTGGGTGAGTGTGAAGGAGATGGTGCTACTGTTCATAGTTGGAGTTCAAGTGGTGAGGATGCCAATGTTGATGGCAATCTTCATGTTAATGATGACTATATGGAAGACCTGGTTGACTGTGATATACAAGAAGATGTATTAGATGTAAATTGCTTAGGTGATATAGAAGTTGATGTGGAATATAATGGAGCATCATCAACTGACATGTCTGATAGTGATGTTGATGATGGCATAAATACTGATGATGATAGAGGTTTGTCCGATGATGAATGGGAATCCGAAGAATTAGTTAGTGGAGCAGAAAGTGATGGAGAAGATGATGAAGAAGAGATTGAAACAAAGTCCACCATTGAAGCATGCAATTCCTCAGACTCATGCCCCTCTCTCCTCTCTTATTTCTTGCCATGGGACTCCAAAGTATCAGAAATCGCGACTCGTTTCCACGTAAACGCCTCTGATATCTTGGCGTCGAACTCTCTCTTCCCCATAACATCATCAAGTGCACACCAAATCCTGAGGGCCAAAACGTTTGTCAAAATACCCATCTTCTGCTCTTGTGTGGATGGCATCCGAAGGTCCATGTCAACCATTTACACTGTTCGTGCAGCAGACACAGCTGCGTCCATATCAGAAGGTTATGGTGGGTTGGTCAGTGGTGAACAAATCAAGATTCTGAACAGCATCAATGGCAGCAACCCCTTGAGGAATGGAGGCACCCTTGTTATTCCACTGCCATGCACATGTTTTAACAACGTTAACAATGGGGGAACCGCTGTTTACATGTCATATGTTGTGCAGATAAGAGAGAGCCTGAGCAGCATAGCAGCGAAGTTTGGTACAACTATTTCGGACTTGAAAGCTGTCAATGGCTTTTCGGAACCTACAGTAGATCCTGGAGACATTATATCTCTTCCCATTGCAGCATGTTCATCAGCAACCTTGAAATGGTACGATGAGAGTATGATAGTCCCAAATGGCTCATATACATTAACTGCCAGCAACTGCATCAAATGCAGTTGCCAACCAATGGATATTACGATGCGATGCGTTCCTTCTGGGCTAGCTGTTCCCTGCTATAACTTACGTTGCAAACAATCCAATCTTATTATTGGCAGTGAATGTGTGGAGCATTCAGAAACAGCTTGCAATCTGATCCAATGTGTTTACCGTGGCCACAGGGGTGGAAAAATTCTGAGTAGAACTCTTCTTACCTCCAGTGCCCTGATAATGTCTGTCATAGACGAGCATCATGTTGGTCTTTCTCATCATCTGAAGACCCATTTGGTATGTCTCCGAAGACATCCTCCTCCTTGCCATTGCCAGTTTCTAAAGCTTCTCAAAAGACCAGTGCCTTCAATGGAAGGCTTGCTCGATTTTTAA 1707 0.4271 MLHVSEPDIIHLLENVEVEVENVTPDIGEAVGIYEGESENEGYGQFEQQGNGECEKEGGGQCEQKDGECENDGECEQQTEIVGEDNVPVEEERCEGDGVVEGEIETQFDVGECEGDGATVHSWSSSGEDANVDGNLHVNDDYMEDLVDCDIQEDVLDVNCLGDIEVDVEYNGASSTDMSDSDVDDGINTDDDRGLSDDEWESEELVSGAESDGEDDEEEIETKSTIEACNSSDSCPSLLSYFLPWDSKVSEIATRFHVNASDILASNSLFPITSSSAHQILRAKTFVKIPIFCSCVDGIRRSMSTIYTVRAADTAASISEGYGGLVSGEQIKILNSINGSNPLRNGGTLVIPLPCTCFNNVNNGGTAVYMSYVVQIRESLSSIAAKFGTTISDLKAVNGFSEPTVDPGDIISLPIAACSSATLKWYDESMIVPNGSYTLTASNCIKCSCQPMDITMRCVPSGLAVPCYNLRCKQSNLIIGSECVEHSETACNLIQCVYRGHRGGKILSRTLLTSSALIMSVIDEHHVGLSHHLKTHLVCLRRHPPPCHCQFLKLLKRPVPSMEGLLDF 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04081 568 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 222 515 - -
Vian1g04081 568 ProSiteProfiles LysM domain profile. 370 413 IPR018392 -
Vian1g04081 568 SMART LysM_2 371 414 IPR018392 -
Vian1g04081 568 SMART LysM_2 306 352 IPR018392 -
Vian1g04081 568 Pfam LysM domain 307 352 IPR018392 -
Vian1g04081 568 Pfam LysM domain 372 414 IPR018392 -
Vian1g04081 568 SUPERFAMILY LysM domain 370 414 IPR036779 -
Vian1g04081 568 MobiDBLite consensus disorder prediction 171 225 - -
Vian1g04081 568 CDD LysM 371 413 IPR018392 -
Vian1g04081 568 MobiDBLite consensus disorder prediction 183 222 - -
Vian1g04081 568 MobiDBLite consensus disorder prediction 42 73 - -
Vian1g04081 568 ProSiteProfiles LysM domain profile. 305 351 IPR018392 -
Vian1g04081 568 Gene3D LysM domain 299 364 IPR036779 -
Vian1g04081 568 Gene3D LysM domain 365 422 IPR036779 -
Vian1g04081 568 MobiDBLite consensus disorder prediction 58 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04081 Vian-Chr1 63890851 63898079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04081 223 508 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 45.486 2.95e-77 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04081 - - vra:106767878 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04081 1 63890851 63898079 Vian1g04081 1 63890851 63898079 ECH