Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03301 ATGGCCAAAGTACAGAGTGGCCAAGCGAGTGAAGGGATTAAGCTGTTTGGAACAACGATCACTTTGCATGGTAGAGAAACAAGAGAAGATGATAAAGAGAGTGAAGAAGGGACAGAAGAGAAGAGACCTGATAGGATCATACCATGTCCAAGATGCAAGAGCATGGAAACCAAGTTTTGCTACTTCAACAACTACAACGTTAATCAGCCAAGGCATTTCTGCAAGGGCTGCCAGAGGTACTGGACGGCCGGCGGAGCCCTTCGCAACGTACCCATAGGGGCAGGTCGCCGGAAGGCCAAACCGCCGTGCCATGACCCTACAGGATTTCTCGACGATGGACTCGCATCCACGGTTCAACAACAATTTGGTTTGGAAGATAGATTGATCTTGGATCAATGGCATGTTGCCACCATCACTCACGGCGATTTCCGGCAGTTTTTTCCTTCTAAAAGGCGGAGGATAAATTCAGGTGGTCAACGTCAACCTTTCTAA 492 0.4858 MAKVQSGQASEGIKLFGTTITLHGRETREDDKESEEGTEEKRPDRIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKAKPPCHDPTGFLDDGLASTVQQQFGLEDRLILDQWHVATITHGDFRQFFPSKRRRINSGGQRQPF 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03301 163 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Vian1g03301 163 MobiDBLite consensus disorder prediction 23 44 - -
Vian1g03301 163 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Vian1g03301 163 MobiDBLite consensus disorder prediction 15 44 - -
Vian1g03301 163 PANTHER CYCLIC DOF FACTOR 2 29 100 IPR045174 GO:0003700|GO:0006355
Vian1g03301 163 Pfam Dof domain, zinc finger 45 100 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03301 Vian-Chr1 54992530 54993021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03301 8 159 C2C2-Dof Transcription Factor Family AT2G34140 55.357 1.30e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian1g03301 zf-Dof 7.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03301 - - vra:106779806 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03301 1 54992530 54993021 Vian1g03301 1 54992530 54993021 ECH