Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03219 ATGGAACATCATCGAGGCAGAGAAGAAAATACAAAAATTCATCTTGCAGTTCCTGCTGCACCGCCAAAACCGCAGCACAAATGTCCTCGCTGCAATTCCACCAACACCAAATTCTGCTACTTCAACAACTATAGTCTCTCGCAGCCTCGCCACTTCTGCAAAACGTGTAAAAGGTACTGGACGCAGGGTGGAACCTTCAGGAACATACCCGTTGGTGGTGCTTCCCGTAAGGCCAAACGTGGCAAAACAGATTCTTCACCCTCCAATTCACTCACACAGCCACACTCAGATTTGGTGAACCCTTCTCCGTCACTCACCATGGCTCACTCAACTACCCCTTACTATCAACTTGGTAGTGGTGGAGGTGGCGGTGGTGGTGGTGGAGGAGGAGGGTATTTGTCTTCTCTGGCAACGCTTCATTCTCTGACCCCATCGCAGCCTTTCAATCACTACCTGAACGTTGCGGGCTCTTCTTCTATTTTGCCTCTTCTGTCTGGCTTCAACGCTGCTGCTGCTGCTGCTTCTTTTCCTCCTCGGTTCCATCACGTGGGAATCAGAGAGAGGATGGAATCTCTCTATCCTGCACCACAACGTTTGCTTCCATCAAACGTGTCTGGTGGCAGTGCTGCTGCAGCAGCACAAAGCTTGATTAGTGATGTTTCAAGTACAAACCTTACGGCTGGTTCTGATGTCTCTTTTTGGAGTGCTACTATCAACGCCACTTCCATCAGTGGAAACTCTGATCGCAACAATGTCAAAGGTGGTTCTTCTTCCTCTTTGATCCCAAATCATTGGCTTCATCCTCCAGGGTACCGTCCTCCTCAATAA 828 0.4928 MEHHRGREENTKIHLAVPAAPPKPQHKCPRCNSTNTKFCYFNNYSLSQPRHFCKTCKRYWTQGGTFRNIPVGGASRKAKRGKTDSSPSNSLTQPHSDLVNPSPSLTMAHSTTPYYQLGSGGGGGGGGGGGGYLSSLATLHSLTPSQPFNHYLNVAGSSSILPLLSGFNAAAAAASFPPRFHHVGIRERMESLYPAPQRLLPSNVSGGSAAAAAQSLISDVSSTNLTAGSDVSFWSATINATSISGNSDRNNVKGGSSSSLIPNHWLHPPGYRPPQ 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03219 275 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 22 106 IPR045174 GO:0003700|GO:0006355
Vian1g03219 275 MobiDBLite consensus disorder prediction 244 275 - -
Vian1g03219 275 MobiDBLite consensus disorder prediction 1 26 - -
Vian1g03219 275 MobiDBLite consensus disorder prediction 70 103 - -
Vian1g03219 275 MobiDBLite consensus disorder prediction 244 263 - -
Vian1g03219 275 ProSitePatterns Zinc finger Dof-type signature. 28 64 IPR003851 GO:0003677|GO:0006355
Vian1g03219 275 Pfam Dof domain, zinc finger 25 80 IPR003851 GO:0003677|GO:0006355
Vian1g03219 275 ProSiteProfiles Zinc finger Dof-type profile. 26 80 IPR003851 GO:0003677|GO:0006355
Vian1g03219 275 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03219 Vian-Chr1 53643059 53643886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03219 18 91 C2C2-Dof Transcription Factor Family AT1G51700 64.865 2.44e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian1g03219 zf-Dof 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03219 - - gmx:100814555 291.967