Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02830 ATGGGTGCTCAAAAAGGGGTTGTTTGGATGGCGAGAGTTGTAGCGGTGGTTGCAATCGCGGTGGTGGCGAGCGTAGAGGCCCAACCGGAGGCCCAATTCGTGTGCAACAGCGCGAACAACTCAAGGTGTGGCGCCCTCATAGGGTACTCTCACACGAACGGCACCACCCTCGGCGACATCCAAACCCTCTTCACCGTGAAGAAACTTGTGGGCATCCTAGGCGCCAACAACCTCCCGAGCAACACCACAAAGAGCCACGTGGTGGGGCCCAACGAGGTTGTGAAGGTGCCGCTCCCGTGCAGGTGCAGCAACGGGACTGGACTCTCGGACGGGGTTCCACTGTATAAGATAAAAAAGGGGGACACGCTGTACGACATAGCGACGACGACGTTTGGGGGTTTGGTTAAGTATCCGCAGATCACGGCGGCGAATAAGTTACCGGACGAGAATAACATCACCGCTGGGGCCACGCTTTATATTCCGCTGCCGTGTAGCTGCGATGCGGTGGATGGGAACAGAGTGGTGCACTATGCGCACCTGGTGTTGTCGGGGAGCACGGTGGAGGGAATTGCTGAGCAATTTGGCACCACTCAGCAGACCCTCCTCACTCTGAATGGCATTTCCGACCCCAAAACGCTTCAGGCCGGTCAGATTCTTGATGTTCCTCTTCGAGCTTGTTCCTCGAGTGTGAAAAATGATTCCTTGGACTATCCATTGCTTGTTGCAAATTCTTCTTACGCCTATACTGCCCACGAATGCGTCAAATGCAGCTATACGTGTGATGTCATTTCTTATGTTGAATATGTATTTAGATTACAATGCGAGAAATCCAACCTCAAACCTACCAACTGGTCCACCTGCCCTCCTGCGCAATGTTCAAGCAACGTCTCCATTGGCAACACCACTTCCTCTACTGATTCCTGTAACCGCACAGTCTGTGCCTATACTGGTTATACATTCAACAATATCTCAGCAGAACTTGTAACGCAGAACACTTGTGCAGTGCCACCGAGTCCTTCAGGAGGATCTAGTGGTTCTGGTTCAGGAGCTCCCAGGAGCACTTTGCAAGGCTTGCTTTGGAGTAAACTTTTCATTGTTATTCACTTTGTTCTCTTTCTTGTCTATGTTTTGTAG 1134 0.5168 MGAQKGVVWMARVVAVVAIAVVASVEAQPEAQFVCNSANNSRCGALIGYSHTNGTTLGDIQTLFTVKKLVGILGANNLPSNTTKSHVVGPNEVVKVPLPCRCSNGTGLSDGVPLYKIKKGDTLYDIATTTFGGLVKYPQITAANKLPDENNITAGATLYIPLPCSCDAVDGNRVVHYAHLVLSGSTVEGIAEQFGTTQQTLLTLNGISDPKTLQAGQILDVPLRACSSSVKNDSLDYPLLVANSSYAYTAHECVKCSYTCDVISYVEYVFRLQCEKSNLKPTNWSTCPPAQCSSNVSIGNTTSSTDSCNRTVCAYTGYTFNNISAELVTQNTCAVPPSPSGGSSGSGSGAPRSTLQGLLWSKLFIVIHFVLFLVYVL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02830 377 CDD LysM 115 160 IPR018392 -
Vian1g02830 377 Gene3D LysM domain 174 233 IPR036779 -
Vian1g02830 377 ProSiteProfiles LysM domain profile. 113 160 IPR018392 -
Vian1g02830 377 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 11 335 - -
Vian1g02830 377 Gene3D LysM domain 114 169 IPR036779 -
Vian1g02830 377 ProSiteProfiles LysM domain profile. 177 221 IPR018392 -
Vian1g02830 377 Pfam LysM domain 181 222 IPR018392 -
Vian1g02830 377 Pfam LysM domain 115 161 IPR018392 -
Vian1g02830 377 SUPERFAMILY LysM domain 177 222 IPR036779 -
Vian1g02830 377 CDD LysM 179 221 IPR018392 -
Vian1g02830 377 SMART LysM_2 114 161 IPR018392 -
Vian1g02830 377 SMART LysM_2 178 222 IPR018392 -
Vian1g02830 377 SUPERFAMILY LysM domain 114 162 IPR036779 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02830 16 319 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 49.346 8.09e-92 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02830 - - gmx:100804190 499.204