Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02829 ATGGCATTGAACTCCATGGCTGCTTCTCATTCCCATTTCCCAAGTGACTCAGGCCAGCATCGACCTCCTACTCGTCAATCTGCATCAAAAGTGTGTCGAGTTTGTAGTGATCAGATTGGACATGGGGAAAATGGAAAGCTTTTTGTGGCTTGCCATGTGTGTAGTTTTCCCGTTTGTCAACCCTGCTATGAGTATGAGAGGAGTGAAGGGAACCAGTGCTGCCCTCAGTGCAACACCCGCTATAAGCGCCACGAAGGTTGTCCTAGAGTAGCTGGTGATGATGAGGAGCATTCTGATGCAGATGATTTTCATGATCCAGATGAGAAACATGATGCCAATCATTGGGAAAATAAAGACCACAAGGAACAGCAGTGGCATCCGAAAGGTCAAGCTTTATCTTCAGCAGGAAGTGTGGCTAGTAAGGAATTTGAAGGGGAGAAGGAATTCTTCAGTAATGGAGAATGGGAAGAAAGATTAGAGCAATGGAAAGCCAGGCAAAAAAAGAGAGGTATTCTTAACAAAGATGAAGCCAAAGATGACCAGGGAGAAGATGATTACCTTTTGGCTGAAGCTAGGCAACCATTGTGGCGTAAGGTTCCAATATCTTCAAGTCTAATCAACCCATATCGCATAATCATAATCATGAGGCTCTTTATCCTCGTTTTCTTCCTCCGTTTCCGTGTCTTAACTCCAGCATATGATGCATATCCACTGTGGCTTGCCTCTGTGATGTGTGAAGTATGGTTTGCACTGTCATGGATACTTGACCAGTTCCCCAAATGGTTCCCCATAACTCGTGAAACTTACTTGGATCGCTTGTCCATGAGGTTTGAGCGTGAAGGGGAGCCAAACCTTCTAGCCCCAGTTGATGTCTATGTGAGTACTGTGGACCCTTTGAAAGAGCCTCCCATTATAACAACAAACACTGTTCTTTCAATCCTGGCTGTTGATTACCCGGTTGACAAGGTGTGTTGCTATGTATCTGATGATGGTGCGTCTATGCTCCTTTTTGATGCACTTTCAGAAACTTCTGAGTTTGCACGAAGATGGGTTCCTTTTTGTAAGAAGTATAGCATAGAGCCAAGGGCACCGGAGTTCTATTTTTCTCAGAAGATTGATTACTTGAAAGATAAGGTGCAGCCTACCTTTGTGAAGGAACGAAGGGCCATGAAGAGAGAATATGAAGAATTTAAAGTAAAAATTAACTCCTTAGTGGCAAAAGCTCAGAAGAAGCCGGAGGACGGGTGGGTGATGCAGGATGGAACCCCTTGGCCTGGCAACAATACTCGTGATCATCCAGGAATGATTCAGATTGGAAAAGCTGGTTCTCTGGTGATGTGGTTCATGAACTTACCATTGCAGGTGTATTTAGGAAGTGGTGGTGCACTGGACGTAGAAGGCAAGGAACTGCCACGGCTGGTGTATATTTCACGTGAAAAGCGTCCTGGCTATAACCACCACAAGAAAGCTGGTGCTATGAATGCTTTGGTTCGAGTTTCAGCTGTGCTTTCAAATGCACCTTTCATGCTGAATCTGGATTGTGACCATTACATAAACAATAGCAAGGCTATAAGAGAGGCCATGTGCTTTTTAATGGACCCCCAGATAGGAAAGAAGCTCTGCTATGTCCAATTTCCACAAAGATTCGATGGTATTGATCGTCATGATAGATATGCTAATCGCAATATTGTATTCTTTGATGCACTATATGGATATGATCCACCAGTATCTGAGAAAAGGCCAAAGATGACCTGTGACTGCTGGCCTTCATGGTGTTGTTGTTGTGGTTGTTCGAGGAAATCCAAGTTAAAGAAGAAATCTGGTGGAAGAGGGGGTCTCTTTAGTAGATTATACACCAGGAAGAAGAAAATGATGGGGAAGAACTACGTTAGGAAAGGGTCTGAGTACATGTTTGATCTTGATCTTGAAGAGATTGAAGAAGGGCGTGAAGGGTATGGCGAGCTAGAGAAATCATCCCTCATGTCCCAAAAAAAGTTTGAGAAGAGATTTGGGCAGTCACCAGTTTTCATTGAGTCCACTTTGATGGAAAATGGTGGACTTCCTGAAGGCACCAACAGTCAATCGCTAATTAAGGAAGCTATTCATGTTATAAGTTGTGGCTATGAAGAAAAGACTGAATGGGGAAAAGAGATTGGATGGATATATGGCTCAGTCACAGAAGATATATTAACAGGGTTTAAGATGCATTGTAGAGGATGGAAATCAGTATACTGCATGCCAAAAAGAGACGCTTTCAAAGGATCTGCCCCAATAAATCTATCAGATAGGTTACACCAAGTTCTGAGATGGGCCCTTGGTTCTGTTGAAATTTTCCTTAGTCGCCATTGTCCATTGTGGTATGGCTATGGAGGAAAACTGAAATGGCTGGAGCGGTTGGCTTATACTAATACCATTGTTTATCCATTCACTTCCATCCCTCTACTTGCATACTGCACAATTCCAGCAGTTTGTCTTCTCACTGGAAAATTCATCATCCCAACTTTGACGAACCTTGCTAGCGTATGGTTCATGGCTCTATTCATCTCCATCATTTTAACTGGTGTGCTAGAGCTGAGGTGGAGTGGTGTGAGCCTTGAAGACTGGTGGCGCAATGAACAATTTTGGGTGATTGGAGGTGTATCTGCTCACCTTTTTGCTGTATTCCAAGGTCTCCTTAAGGTTCTTGGAGGAGTGGACACCAATTTCACAGTGACAGCCAAAGCAGCAGATGATAGTGAATTTGGAGAGTTGTACCTGTTCAAGTGGACAACACTTCTGATCCCACCAACCAGTCTTATAATCTTGAACATGGTGGGAGTTGTGGCTGGAGTCTCTGATGCCATTAACAATGGGTATGGTTCATGGGGTCCTTTGTTTGGGAAGGTATTCTTTGCTTTCTGGGTTATTGTCCATTTATATCCTTTCCTCAAAGGTCTCATGGGAAGGCAAAACAGAACTCCTACTATTGTTGTCCTTTGGTCAATTCTTTTGGCATCAATTTTCTCTTTGATTTGGGTTAGAATTGATCCTTTCTTGCCAAAACAAACTGGCCCAGTTCTCAAACAATTAACAGACATTACATGTTTCACTTTCAGCAAGGAGAAAAAGCTGTCAGAATTCAGGGCCAAACTTGAACGAAAGATTCAAGATTTAGCTGCAAGTCCTTTGGCATCACCACCCGCTTCATCAGAAACAAAGAGGAGAGGGAGAGTGTTGTACGTGAGTGAGTATGGTGCGGATCCAAGTGGAAATGAAGAGAGTGGTGATGCCATTTTGAAAGCAGTGGAAGATGCTTCTAGTTTGCAGAAGGGTTATGAGATGGTTGCAGGGGTGAATGACCTTGGAGGAGTTGTCATTGATTTGGAAGGTGGAAACTACAAAATCAGCAAACCCATCACATTCCCTTCAGGTGTTGGCAATATTGTGGTAAGAGAAGGAACGTTGAGAGCATCTGATAAATTTCCTGGTGATAGACATCTAGTTGAGTTATGGTCATCAAAGACTGGGAAAGAAGGCAATGGTGGAATTTACTATGAAGACATAACTTTCAGGGACATTCTCTTTGATTCAAGCTACAGAGGAGGAGGGATATTGATCATTGATTCTGCTAGAATCCGGATCAACAATTGCTTCTTCCTTCACTTCACCACAGAAGGAATTCTGGTCCACCAAGGACACGAGACCTTCATCACAGATTGCTTTCTTGGACAACACTCAACCGTCGGAGGAGACAAAGATGAAAAGCACTTCTCAGGGGTGGCCATCGATCTTGCTAGCAATGATAATGCAATCACAGATGTTGTAGTTTTCTCAGCAGCCATTGGTGTTGTTCTACGGGGTCAAGCTAACATTTTAACTGGGGTGCATTGCTATAACAAGGCAACAGGTTTTGGTGGCATAGGGATATTAGTGAAATTGCCTGGTAATTCTCTGACAAGAATTGACAACTGTTATATGGATTACACTGGAATAGTGATGGAAGATCCAGTTCAAGTTCATGTCACAAATGGGTTGTTTCTAGGGGATGCTAATATTGTATTGAAGTCTGTTAAAGGTCAAGTTTTGGGTCTAAATATAGTGAATAACATGTTCAATGGTGACCCCAAAAGAAAGGTTCCTATTGTAAGTCTAGACGGGGAATTCAGTAGCATTGATCAAGCGCTGGTTGATCACAACCTTGTCAATGGGATGGGCTTGAGATCAACGGTTGGGAAGTTAACTGTCAATGGAAATGGCACAAAGTGGGTGGCTGATTTTTCATCGGTTTTGGTGTTTCCTAAGAAAATTAGCAATTTTCAATTTTCATTTTACGCTCAAGATGAGCCTAAGTTTGTAGCATTTTCTGTGACCAATGTGTCAGATAACGTTGTTGTTGTGGAGAGTGAGAAAGAAGCGAAAGGGTCTGTTTCCTTCACAGTTGAACAATAA 4428 0.4286 MALNSMAASHSHFPSDSGQHRPPTRQSASKVCRVCSDQIGHGENGKLFVACHVCSFPVCQPCYEYERSEGNQCCPQCNTRYKRHEGCPRVAGDDEEHSDADDFHDPDEKHDANHWENKDHKEQQWHPKGQALSSAGSVASKEFEGEKEFFSNGEWEERLEQWKARQKKRGILNKDEAKDDQGEDDYLLAEARQPLWRKVPISSSLINPYRIIIIMRLFILVFFLRFRVLTPAYDAYPLWLASVMCEVWFALSWILDQFPKWFPITRETYLDRLSMRFEREGEPNLLAPVDVYVSTVDPLKEPPIITTNTVLSILAVDYPVDKVCCYVSDDGASMLLFDALSETSEFARRWVPFCKKYSIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVKINSLVAKAQKKPEDGWVMQDGTPWPGNNTRDHPGMIQIGKAGSLVMWFMNLPLQVYLGSGGALDVEGKELPRLVYISREKRPGYNHHKKAGAMNALVRVSAVLSNAPFMLNLDCDHYINNSKAIREAMCFLMDPQIGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDALYGYDPPVSEKRPKMTCDCWPSWCCCCGCSRKSKLKKKSGGRGGLFSRLYTRKKKMMGKNYVRKGSEYMFDLDLEEIEEGREGYGELEKSSLMSQKKFEKRFGQSPVFIESTLMENGGLPEGTNSQSLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRDAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIILTGVLELRWSGVSLEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAADDSEFGELYLFKWTTLLIPPTSLIILNMVGVVAGVSDAINNGYGSWGPLFGKVFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPVLKQLTDITCFTFSKEKKLSEFRAKLERKIQDLAASPLASPPASSETKRRGRVLYVSEYGADPSGNEESGDAILKAVEDASSLQKGYEMVAGVNDLGGVVIDLEGGNYKISKPITFPSGVGNIVVREGTLRASDKFPGDRHLVELWSSKTGKEGNGGIYYEDITFRDILFDSSYRGGGILIIDSARIRINNCFFLHFTTEGILVHQGHETFITDCFLGQHSTVGGDKDEKHFSGVAIDLASNDNAITDVVVFSAAIGVVLRGQANILTGVHCYNKATGFGGIGILVKLPGNSLTRIDNCYMDYTGIVMEDPVQVHVTNGLFLGDANIVLKSVKGQVLGLNIVNNMFNGDPKRKVPIVSLDGEFSSIDQALVDHNLVNGMGLRSTVGKLTVNGNGTKWVADFSSVLVFPKKISNFQFSFYAQDEPKFVAFSVTNVSDNVVVVESEKEAKGSVSFTVEQ 1475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02829 1475 Coils Coil 1474 1475 - -
Vian1g02829 1475 FunFam Polygalacturonase QRT3 1074 1470 - -
Vian1g02829 1475 SUPERFAMILY Nucleotide-diphospho-sugar transferases 303 830 IPR029044 -
Vian1g02829 1475 FunFam Cellulose synthase 15 106 - -
Vian1g02829 1475 Coils Coil 387 407 - -
Vian1g02829 1475 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 192 994 - -
Vian1g02829 1475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 105 IPR013083 -
Vian1g02829 1475 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 463 609 IPR029044 -
Vian1g02829 1475 Pfam Zinc-binding RING-finger 23 97 IPR027934 -
Vian1g02829 1475 CDD mRING-HC-C4C4_CesA 30 80 - -
Vian1g02829 1475 Gene3D - 1074 1470 IPR012334 -
Vian1g02829 1475 MobiDBLite consensus disorder prediction 89 126 - -
Vian1g02829 1475 SUPERFAMILY Pectin lyase-like 1070 1373 IPR011050 -
Vian1g02829 1475 MobiDBLite consensus disorder prediction 89 131 - -
Vian1g02829 1475 SUPERFAMILY RING/U-box 18 101 - -
Vian1g02829 1475 MobiDBLite consensus disorder prediction 1 25 - -
Vian1g02829 1475 Pfam Cellulose synthase 289 567 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vian1g02829 1475 Pfam Cellulose synthase 568 1020 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02829 Vian-Chr1 44323157 44333951 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02829 1 44323157 44333951 Vian1g02829 1 44323157 44333951 ECH