Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian1g02578 | ATGTCAGAGGTTAAAGGCTCTGCCATAAAGCTCTTTGGAAGGACAATTTCTCTGCCACACAATGATTCTTCTGCACCTCCGACTCTCGCTTGTCCTTCATCTTCCTCTTCTCCCCCGGAACCTACCTCTGCAACACAACAACACCAAGAAGACCAGGAAGCACAGAGGAAACAACTTACCTCACTTGAAGACGATGATGCCTCATCACATGAAACCACAGAGGATTTAAAATCTGCCGCTTCAGACGTACTCGAGAATCCTAAGACTCCCTCAGCGGAAACAGAGACATCACTGCAGAAATCTCCCGAAAACGAAGAACAGAGTGAGACAAGTGCTTCTGAAGAAAAAACACCAAAGAAACCTGACAACATACTTCCATGTCCGCGGTGCAATAGCATGGACACCAAATTCTGCTACTACAACAACTACAATGTCAACCAGCCTCGTCATTTCTGCAAGAACTGTCAGAGATACTGGACTGCAGGAGGAACGATGAGGAATGTGCCCGTGGGTGCTGGTCGCAGAAAAAACAAGAACACTTCGGCTGCAGCTGTATCACATTACCGACAGATAATGATGCCGGAGGCATTTCAGGGAGCTACACTGAATGCCTCCAATGGATTGCATAATGCCCTTTTTGGGAATGGAGCAGCTGTGTTGACTTTTGGTTCTGATACCCCTCTCTGTGACACCATGAGTTCTGTGTTGAACATTGCTGAGCGAGCCCAAAGTTGTGTATCAAATGGGTTTCATGCAACTGAGCCAAATGGTTATTTTTCCTATAGTAAGGAGGGTGATGGGGGTGGTCATTCTACTGGAGTTTCTGTTTCAACAACTTCAAATTCCAGCCATGCTAGCTCACATGAATCGGTTGATAAAAGAGTTGAAGGTTTCACTCCTCAGTTATCATACTTCCCAGGTGCCCCTTGGCCTTATCCTATGCCTCCTACATTTTTCCAACCTAGGTACCCTTTATCATTCCACACTACACCAGCCTATTGGAGTTGTATGCCACCCTCTTGGAATATCTCATGTATGTCATCCCAATCTTCTGATAGCAACACTGTCTCTGCCCCCATTTTGGGGAAACACTCAAGGAATGGGAACATCATCACCCCATCGAACTCACAGAAAGAAATACATAACAGTTCAGAGCACAATTTCTTGATTCCCAAGACTCTTAGAATCGATGACCCTGGTGAAGCTGCAAAGAGTTCCATGTGGTCAAAACTAGGAACCAAGAATGACAGGACCAGCTCTGGAGGCCTTTTCCAAGCTTTTCCACCCAAGGGAAATGACATGAATCACAGGGTTGAAGCATCACCACAGTTGCAAGCCAACCCTGCAGCTCTATCGCGCTCTCTTACCTTCCATGAACAGACCTGA | 1386 | 0.4625 | MSEVKGSAIKLFGRTISLPHNDSSAPPTLACPSSSSSPPEPTSATQQHQEDQEAQRKQLTSLEDDDASSHETTEDLKSAASDVLENPKTPSAETETSLQKSPENEEQSETSASEEKTPKKPDNILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNTSAAAVSHYRQIMMPEAFQGATLNASNGLHNALFGNGAAVLTFGSDTPLCDTMSSVLNIAERAQSCVSNGFHATEPNGYFSYSKEGDGGGHSTGVSVSTTSNSSHASSHESVDKRVEGFTPQLSYFPGAPWPYPMPPTFFQPRYPLSFHTTPAYWSCMPPSWNISCMSSQSSDSNTVSAPILGKHSRNGNIITPSNSQKEIHNSSEHNFLIPKTLRIDDPGEAAKSSMWSKLGTKNDRTSSGGLFQAFPPKGNDMNHRVEASPQLQANPAALSRSLTFHEQT | 461 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian1g02578 | 461 | MobiDBLite | consensus disorder prediction | 438 | 461 | - | - | |
Vian1g02578 | 461 | Coils | Coil | 45 | 65 | - | - | |
Vian1g02578 | 461 | Pfam | Dof domain, zinc finger | 122 | 179 | IPR003851 | GO:0003677|GO:0006355 | |
Vian1g02578 | 461 | MobiDBLite | consensus disorder prediction | 271 | 286 | - | - | |
Vian1g02578 | 461 | MobiDBLite | consensus disorder prediction | 405 | 461 | - | - | |
Vian1g02578 | 461 | MobiDBLite | consensus disorder prediction | 360 | 381 | - | - | |
Vian1g02578 | 461 | MobiDBLite | consensus disorder prediction | 408 | 422 | - | - | |
Vian1g02578 | 461 | PANTHER | CYCLIC DOF FACTOR 2 | 1 | 460 | IPR045174 | GO:0003700|GO:0006355 | |
Vian1g02578 | 461 | MobiDBLite | consensus disorder prediction | 17 | 49 | - | - | |
Vian1g02578 | 461 | ProSitePatterns | Zinc finger Dof-type signature. | 127 | 163 | IPR003851 | GO:0003677|GO:0006355 | |
Vian1g02578 | 461 | ProSiteProfiles | Zinc finger Dof-type profile. | 125 | 179 | IPR003851 | GO:0003677|GO:0006355 | |
Vian1g02578 | 461 | MobiDBLite | consensus disorder prediction | 50 | 78 | - | - | |
Vian1g02578 | 461 | MobiDBLite | consensus disorder prediction | 16 | 126 | - | - | |
Vian1g02578 | 461 | MobiDBLite | consensus disorder prediction | 99 | 122 | - | - | |
Vian1g02578 | 461 | MobiDBLite | consensus disorder prediction | 261 | 291 | - | - | |
Vian1g02578 | 461 | MobiDBLite | consensus disorder prediction | 84 | 98 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian1g02578 | Vian-Chr1 | 37034261 | 37037007 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian1g02578 | 8 | 459 | C2C2-Dof Transcription Factor Family | AT5G39660 | 38.571 | 1.69e-82 | 260 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-Dof | Vian1g02578 | zf-Dof | 3.7e-32 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vian1g02578 | - | - | gmx:100813315 | 647.121 |