Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01706 ATGATCCAAGAACTGTTGGGTGGAGCTAGCCTCATAGCACCAGAAAGAAAACCCTCCATTAATGGAGGGGGTGCAGGAGGAGGAGGTGGAGGAGTTCTACTCCCAACTTCACCATCTCCCTCTTCTCTTCCTTCTTCCTCAACTAATAATGTTACCCTCACATCCACCACCACAACAACTACTCCTACCACCACCACCACTACTCCCACATCGGAAAATCAAAACCTCAGGTGCCCGCGATGCGATTCATCCAACACCAAGTTCTGCTACTACAACAACTACAACCTCACTCAGCCCCGCCACTTTTGCAAGACGTGCCGCCGCTACTGGACCAAAGGTGGCGCTCTCCGCAACGTTCCCATCGGCGGCGGCTGCCGGAAAAACAAAAATATCGGCGTGGCGAACTCAGTGGCAAAGACAGCCTCAACCAAGATGAAAGCCGTTGCATCTGAGCTTGGAAAATCACCAGGTTTCGGTGGGTTTGAAGTTGAACACGAGCTTCCACCACCGAGCCAAATCCTTTGGGGTTCCCCCCAAAACACTCACCTTCTGGCTCTGCTGAGAGCTACTCAGAATCAAAACCCTAACCCTAACCCTAGTCCCATGTCCATCAAGGAAGAAGGGACCCTGATTGGGCACATGGTGAGCACTGAGCCCTTGGTTTCAAATGCGTTGCTGAATCACCGAATCTTAGGCTATGATGCGGTTGCGCAAGTTCCTTCGCTTGGTCTGTTTGGGAGAAGCAATCAAGATCAGCAACAAAATGGGGGGTTCCTACTTGGGGAACATCACAACAGTGGAATTCACGAGATTTACCAGAAGCTAAGGTCATCATCGGCTAATAATTATTGCGGTGATAACTCGTCACAAGTGTTTATGGGGAACATGGCTTCTAATTATTCCTCTTCTGTGTCCAACAACATTATGGAAACAACATCGGTAGCTGGGGGTGAATTCGGATACTGGAACGGTCCAACCTTTTCGTGGTCTGATCTTCCAACAACGAATGGCGCCGGTGCATATCCGTAA 1029 0.4995 MIQELLGGASLIAPERKPSINGGGAGGGGGGVLLPTSPSPSSLPSSSTNNVTLTSTTTTTTPTTTTTTPTSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNIGVANSVAKTASTKMKAVASELGKSPGFGGFEVEHELPPPSQILWGSPQNTHLLALLRATQNQNPNPNPSPMSIKEEGTLIGHMVSTEPLVSNALLNHRILGYDAVAQVPSLGLFGRSNQDQQQNGGFLLGEHHNSGIHEIYQKLRSSSANNYCGDNSSQVFMGNMASNYSSSVSNNIMETTSVAGGEFGYWNGPTFSWSDLPTTNGAGAYP 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01706 342 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Vian1g01706 342 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Vian1g01706 342 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 64 276 IPR045174 GO:0003700|GO:0006355
Vian1g01706 342 MobiDBLite consensus disorder prediction 6 76 - -
Vian1g01706 342 Pfam Dof domain, zinc finger 74 130 IPR003851 GO:0003677|GO:0006355
Vian1g01706 342 MobiDBLite consensus disorder prediction 35 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01706 Vian-Chr1 19690049 19691077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01706 45 161 C2C2-Dof Transcription Factor Family AT5G60200 54.167 1.24e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian1g01706 zf-Dof 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01706 - - gmx:778108 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00619 10 5929300 5930340 Vian1g01706 1 19690049 19691077 PCT