Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01631 ATGCCTTCAATGACCATAATCTTGCTCTTCCTTTTCTTCACTTTCTCACATGTTAAGGCCATGTCCCTCATCAATTACTCCGAAAACGAGGTCATGGACATGTACGAGAAGTGGTTGGTGAAGCACCGAAAGGTGTACAATGGGTTGGGAGAGAAGGACAAGAGGTTTCAAGTGTTCAAAGAGAACTTGGAATTCATCCAAGACCACAACGCTCAGAACAACACATACACTCTTGGATTGAACAAGTTTGCTGATATCACCAACCAGGAATACCGTGCCATGTATTTGGGCACCAGAACTGATGCCAAACGCAGGGTCATGAAAACCCAGAGGACCGGTCACCGGTATGCTTACAACTCCGGTGACCGCTTGCCGGGGCACGTCGATTGGAGGTTGAAAGGTGTAGTTGCTCCCATCAAAGATCAGGGAAGTTGTGGAAGTTGTTGGGCTTTCTCAACAGTGGCTAGTGTGGAAGCTATAAATAGCATAGTGACAGGGAAGTTTGTGTCGCTATCAGAACAAGAGCTTGTGGACTGTGACAGAGACTATAATGAAGGATGCAATGGTGGTCTCATGGACTACGCATTCCAGTTCATCATTAAAAATGGTGGCATGGACACAGAAGAAGATTATCCATACAAGGGCCAAGATGGAACTTGTGATCTAACTAAGAAAAAGGCCAAGGTAGTGCAAATTGATGATTACAAAGATGTTCCATCATATGACGAGAAGGCCTTAAAGAAAGCTGTTGCTCATCAACCCGTAAGCGTTGCTATTGAAGCCTCTGGCAGGGCTTTGCAACTTTATCAGTCTGGTGTGTTTACTGGTAAATGTGGAACAAATTTAGATCATGGTGTGGTGGTTGTTGGATATGGGAGTGAAAATGGTGTTGATTACTGGCTGGTGAGGAATTCATGGGGCAGTGGATGGGGTGAGGATGGCTATTTCAAGATGGAGCGCAACGTTAGAAGCAGCTCCACAGGGAAGTGTGGAATTGCAATGGAGGCTTCCTACCCTGTTAAGTATGGTCTAAACTCTGCAGTTCCTAGTTCAGCTTACCAAAGCAATGAAGTGTCCATCAGCAGTGCTTGA 1092 0.4551 MPSMTIILLFLFFTFSHVKAMSLINYSENEVMDMYEKWLVKHRKVYNGLGEKDKRFQVFKENLEFIQDHNAQNNTYTLGLNKFADITNQEYRAMYLGTRTDAKRRVMKTQRTGHRYAYNSGDRLPGHVDWRLKGVVAPIKDQGSCGSCWAFSTVASVEAINSIVTGKFVSLSEQELVDCDRDYNEGCNGGLMDYAFQFIIKNGGMDTEEDYPYKGQDGTCDLTKKKAKVVQIDDYKDVPSYDEKALKKAVAHQPVSVAIEASGRALQLYQSGVFTGKCGTNLDHGVVVVGYGSENGVDYWLVRNSWGSGWGEDGYFKMERNVRSSSTGKCGIAMEASYPVKYGLNSAVPSSAYQSNEVSISSA 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01631 363 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 142 153 IPR000169 -
Vian1g01631 363 SMART Inhibitor_I29_2 35 91 IPR013201 -
Vian1g01631 363 Gene3D Cysteine proteinases 17 342 - -
Vian1g01631 363 Pfam Papain family cysteine protease 124 340 IPR000668 GO:0006508|GO:0008234
Vian1g01631 363 SUPERFAMILY Cysteine proteinases 27 340 IPR038765 -
Vian1g01631 363 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 28 339 IPR013128 GO:0008234
Vian1g01631 363 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 299 318 IPR025661 -
Vian1g01631 363 Pfam Cathepsin propeptide inhibitor domain (I29) 35 91 IPR013201 -
Vian1g01631 363 PRINTS Papain cysteine protease (C1) family signature 299 305 IPR000668 GO:0006508|GO:0008234
Vian1g01631 363 PRINTS Papain cysteine protease (C1) family signature 284 294 IPR000668 GO:0006508|GO:0008234
Vian1g01631 363 PRINTS Papain cysteine protease (C1) family signature 142 157 IPR000668 GO:0006508|GO:0008234
Vian1g01631 363 SMART pept_c1 124 340 IPR000668 GO:0006508|GO:0008234
Vian1g01631 363 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 282 292 IPR025660 -
Vian1g01631 363 FunFam Cysteine protease 1 17 342 - -
Vian1g01631 363 CDD Peptidase_C1A 125 339 IPR039417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01631 Vian-Chr1 18556041 18558328 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g02228 4 39093050 39095268 Vian1g01631 1 18556041 18558328 ECH
Vian7g00698 7 15181748 15185031 Vian1g01631 1 18556041 18558328 ECH
Vian1g01631 1 18556041 18558328 Vian1g01631 1 18556041 18558328 ECH