Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01628 ATGGCTCTCGGTGACGATGCACAGCACCACTCTCCCTCCATCCTCGATGCGCTTCTCTGCGAAGAGCGTGACACCTTCGACGAAGATTTCGATGCGAACGGCGCTGAGTGTGAGATCAACGACGATGACCCATCTGGGAGAAAGTTGCAATCTTTGCCTTTGGCTTTGCTTCAAAATGATCTGTTCTGGGAAGATGAAGAGCTTGTGTCTTTAATCTCGAAAGAGGGAGAGACCCATTCGTGTTCTCTTAGTGCCATTGCCGATGGGCCCTTAGAAGGCTCTCGTGTGGAGGCTGTGAACTGGATTTCAAAAGTCTGTGGACATTATGGGTTTTCTGCTTTGACCACAGTTCTTGCTGTTAACTACTTTGATCGGTTCATCCCATGTCTGAGGTTTCACAGGGACAAGCCGTGGATGACACAGCTCACTGCCGTTGCTTGTTTGTCCCTTGCTGCAAAAACCGAAGAGACCCATGTGCCGCTTCTTTTGGACCTTCAAGTGGAGGAATCGAGGTTTGTGTTTGAGGCCAAGACCATTCAGAGAATGGAGCTGCTAGTGCTGTCAACTCTTAAATGGAGGATGCATCCGGTGACTCCAATTTCTTTCTTTGAACACATTGTCAGAAGGCTTGGTTTGAAGAGTCGCTTGCATTGGGAGTTTCTATGGCGTTGTGAGCGGGTTCTTCTCAATGTCACTGCGGATTCAAGGGCTATGAGTTATCTTCCTTCTACATTGGCTGCTGCTACCATGATCCATGTTATTAAAGAGATTGAATCATTTAACGCTACGAAGTACATTGATCAGCTTCTTGGTTTACTAAAGATTAGCGAGGAACAAGTGAACCAGTGCTACAAGCTCATGCAGAAAATATTAGGTCGCTATGAAGGCATTTACAGCCTTCACCAGAAACGCAAGCGTCTAACTGAACCAAGTAGCCCAGGTGGTATCCTTGATTCAACTTTCAGCTGTGATAGCTCAAATGATTCGTGGGCATTGTCATCATCAGTCTCACTCTCACTGGAGCCGCTGTTTAAGAGGAGAAGACCTCAGGACCAGCAAATGCGACTGCCTTCTGTTAGTCGCGTGTCAATTGATGTTCTTAATAGCCCTCGTTAA 1116 0.4695 MALGDDAQHHSPSILDALLCEERDTFDEDFDANGAECEINDDDPSGRKLQSLPLALLQNDLFWEDEELVSLISKEGETHSCSLSAIADGPLEGSRVEAVNWISKVCGHYGFSALTTVLAVNYFDRFIPCLRFHRDKPWMTQLTAVACLSLAAKTEETHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIVRRLGLKSRLHWEFLWRCERVLLNVTADSRAMSYLPSTLAAATMIHVIKEIESFNATKYIDQLLGLLKISEEQVNQCYKLMQKILGRYEGIYSLHQKRKRLTEPSSPGGILDSTFSCDSSNDSWALSSSVSLSLEPLFKRRRPQDQQMRLPSVSRVSIDVLNSPR 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01628 371 PANTHER CYCLINS 86 292 IPR039361 -
Vian1g01628 371 SMART cyclin_7 100 188 IPR013763 -
Vian1g01628 371 SMART Cyclin_C_2 197 310 IPR004367 -
Vian1g01628 371 Gene3D - 196 285 - -
Vian1g01628 371 FunFam CYCLIN D32 196 285 - -
Vian1g01628 371 CDD CYCLIN_AtCycD-like_rpt1 95 192 - -
Vian1g01628 371 SUPERFAMILY Cyclin-like 62 195 IPR036915 -
Vian1g01628 371 SUPERFAMILY Cyclin-like 179 292 IPR036915 -
Vian1g01628 371 Gene3D - 93 195 - -
Vian1g01628 371 Pfam Cyclin, C-terminal domain 197 294 IPR004367 -
Vian1g01628 371 Pfam Cyclin, N-terminal domain 94 194 IPR006671 -
Vian1g01628 371 FunFam D3-type cyclin 88 195 - -
Vian1g01628 371 CDD CYCLIN_AtCycD-like_rpt2 197 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01628 Vian-Chr1 18525532 18526990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01628 7 361 Core Cell Cycle Gene Families AT5G67260 50.413 6.16e-111 328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00558 10 5261793 5263097 Vian1g01628 1 18525532 18526990 ECH
Vian4g02225 4 39054106 39058697 Vian1g01628 1 18525532 18526990 ECH
Vian7g00693 7 15116639 15118206 Vian1g01628 1 18525532 18526990 ECH
Vian1g01628 1 18525532 18526990 Vian1g01628 1 18525532 18526990 ECH
Vian1g01628 1 18525532 18526990 Vian10g00558 10 5261793 5263097 PCT