Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01625 ATGATGGCCGTAAGCCGAAAGGACATGGACCGGATCAAGGGTCCATGGAGCCCCGAAGAGGATGAGGCCCTGCAGAAGCTGGTGGAGAGGCACGGGCCCAGAAACTGGTCGCTCATAAGCAGGTCAATCCCGGGCCGCTCTGGAAAATCCTGCAGGCTCCGATGGTGCAACCAGCTGTCGCCCCAGGTTGAGCACCGGGCTTTCACGCCCGAGGAAGACGACACAATAATCCGCGCTCATGCCCGTTTCGGCAACAAATGGGCCACCATAGCCCGCCTTCTCTCGGGTCGCACCGATAACGCTATCAAAAACCACTGGAACTCAACCTTAAAGCGCAAGTGCGCCTCCATCATGATCGCCGAAGATCCCGCCGCCGCCGCTGCCGGTTTCAGTCCGCAGCCTCTCAAGCGCTCCTTCAGCGCCGGCGCTGCCCTGCCCCCGGGAAGCCCCTCGGGATCCGATGTGAGCGAGACCAGCGCCCCTGGTGTAGTCTCCCCATCGCACGTGTTCCGGCCCGTGGCGGTTCGACCCGTGGTCGAAACGGCGTCGTCGTGCGACGACGGTCCCACCACCTCGCTGTCGCTGTCTCTTCCCGGCGTGGAGTCATCGGAAACCTCGAATCGGGCAGGCGCGATGCAAGCTAATCCCTTCACTATGGCGCCGGTGACGACCGTAGCGAGTCCGGCGGCGGAGGTTGGAATGGGAGCGTTGAATTTGAGTGCGGAGTTTATGGCGGTGATGCATGAGATGATAAAGAAGGAGGTTCGGAGTTACATGGAGCAGCAGAGTGCGATGTGTTTTCAGGGTGTGGACGGTTTTAGGAACGTGTCGGTGAAGCGAATTGGGATTAGCAGGGTTGATTCCTAA 867 0.6044 MMAVSRKDMDRIKGPWSPEEDEALQKLVERHGPRNWSLISRSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASIMIAEDPAAAAAGFSPQPLKRSFSAGAALPPGSPSGSDVSETSAPGVVSPSHVFRPVAVRPVVETASSCDDGPTTSLSLSLPGVESSETSNRAGAMQANPFTMAPVTTVASPAAEVGMGALNLSAEFMAVMHEMIKKEVRSYMEQQSAMCFQGVDGFRNVSVKRIGISRVDS 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01625 288 ProSiteProfiles Myb-like domain profile. 8 59 IPR001005 -
Vian1g01625 288 MobiDBLite consensus disorder prediction 139 163 - -
Vian1g01625 288 CDD SANT 15 57 IPR001005 -
Vian1g01625 288 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Vian1g01625 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 63 IPR017930 -
Vian1g01625 288 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Vian1g01625 288 PANTHER MYB PROTEIN-RELATED 13 198 - -
Vian1g01625 288 FunFam Transcription factor MYB44 67 113 - -
Vian1g01625 288 Gene3D - 66 126 - -
Vian1g01625 288 CDD SANT 67 110 IPR001005 -
Vian1g01625 288 MobiDBLite consensus disorder prediction 184 203 - -
Vian1g01625 288 MobiDBLite consensus disorder prediction 181 203 - -
Vian1g01625 288 SMART sant 12 61 IPR001005 -
Vian1g01625 288 SMART sant 64 112 IPR001005 -
Vian1g01625 288 Gene3D - 12 64 - -
Vian1g01625 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 114 IPR017930 -
Vian1g01625 288 Pfam Myb-like DNA-binding domain 16 73 - -
Vian1g01625 288 FunFam MYB transcription factor 13 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01625 Vian-Chr1 18439408 18440274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01625 5 287 MYB Transcription Factor Family AT4G37260 50.464 4.89e-95 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian1g01625 Myb_DNA-bind_6 3.8e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00554 10 5232948 5233847 Vian1g01625 1 18439408 18440274 ECH
Vian7g00690 7 15068329 15069192 Vian1g01625 1 18439408 18440274 ECH
Vian1g01625 1 18439408 18440274 Vian1g01625 1 18439408 18440274 ECH
Vian1g01625 1 18439408 18440274 Vian10g00554 10 5232948 5233847 PCT