Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01272 ATGGCTTCCTCTGTGACATCCATGTCTTCTTCTACCATCCTTCTCATTAGCATCTGCACACTGTCCTCAATTCTGTCAGTTCCTTATGCAACAGCATCTGAGGAAGGAAGGACAAGACCCTTTAAGAGGGTTTATGCCTTTGGGGATTCTTTTACTGACACAGGCAACACCAAGAACGCAGAAGGTCCAAGTGGCTTTGGCCATGTCTCAAACTCTCCCTACGGTACCACTTTCTTCAACCATTCCACCAACAGGTACTCAGATGGAAGGCTTGTGATTGACTTCGTGGCCGAAGATCTTTCTCTGCCTTATTTGCCCCCTTACCGGCACCGCAAAGGCAACGACACTTTCGGTGTTAACTTTGCCGTTGCAGGTTCCACAGCCATAAACCACTTGTTCTTTGTCAAGAACAACCTCTCCCTTGACATCACTCCTCAGTCCATCCAAACTCAGATGATATGGTTCAACAGGTACCTGGAAAGCCAGGAATGCGAAGAATCAAAGTGCAAAGACTTCGACGATACTCTATTTTGGTTTGGGGAGATCGGTGTCAACGACTATGCCTACACTCTTGGATCTACCGTCCCAGATGATACCATAAGGAAGCTTGCAATCAGCAGCGTCTCGGGAGCATTACAGGCATTGCTAGAGAAGGGTGCGAAATACCTAGTTGTGCAGGGTTTACCTCTCACTGGTTGTTTGACGTTGTCCATGTATCTGGCTCCTCCTGATGATAGGGATGAGCTTGGGTGTGTGAAAAGTGTGAACAACCAAAGCAACTACCACAACCTTGTGCTGCAAAACAAACTAGAGGAATTTAGGAAACAGTACCCCCAAGCTGTCATACTTTATGCCGATTACTTCAACGCCTACCGCACAGTTATGAAGAATCCGACCAAGTACGGATTCAAAGAAGTGTTCAATGTTTGTTGTGGATCAGGAGAACCACCTTACAACTTCAGTGTGTTTGGCACGTGTGGCACACCTAACGCCACTGCCTGCACAAACCCTTCTCAGTACATAAATTGGGATGGTGTTCACCTGACTGAGGCCATGTATAAAGTTATTTCTAGCATGTTTCTGCAAGGAAACTTCACCCAACCTCCCTTTAATTTTTTGTTGGCAAAAAAAGAGAGGGCGGGGTGA 1146 0.4651 MASSVTSMSSSTILLISICTLSSILSVPYATASEEGRTRPFKRVYAFGDSFTDTGNTKNAEGPSGFGHVSNSPYGTTFFNHSTNRYSDGRLVIDFVAEDLSLPYLPPYRHRKGNDTFGVNFAVAGSTAINHLFFVKNNLSLDITPQSIQTQMIWFNRYLESQECEESKCKDFDDTLFWFGEIGVNDYAYTLGSTVPDDTIRKLAISSVSGALQALLEKGAKYLVVQGLPLTGCLTLSMYLAPPDDRDELGCVKSVNNQSNYHNLVLQNKLEEFRKQYPQAVILYADYFNAYRTVMKNPTKYGFKEVFNVCCGSGEPPYNFSVFGTCGTPNATACTNPSQYINWDGVHLTEAMYKVISSMFLQGNFTQPPFNFLLAKKERAG 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01272 381 CDD SGNH_plant_lipase_like 44 364 IPR035669 -
Vian1g01272 381 Gene3D SGNH hydrolase 32 364 IPR036514 -
Vian1g01272 381 Pfam GDSL-like Lipase/Acylhydrolase 44 358 IPR001087 GO:0016788
Vian1g01272 381 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 22 368 - -
Vian1g01272 381 SUPERFAMILY SGNH hydrolase 41 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01272 Vian-Chr1 13764640 13765852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01272 44 363 Acyl Lipid Metabolism Gene Families AT4G10950 26.807 1.56e-28 113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01272 1 13764640 13765852 Vian1g01272 1 13764640 13765852 ECH