Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00859 ATGCAGCAAATACACTCCATGGCACCAGGAACAGCGGGAGGAGGAGGAGGAGCCAGGTTTTTCTCCGGCACCGCCTCCGCGGACAGGAGGGTCCGACCCCACCACCAGAACCACCAGGCCCTCAAGTGCCCCCGCTGTGACTCCCTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCCCAGCCTCGCCACTTCTGCAAAAACTGCCGCCGCTACTGGACCAAGGGCGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGGTGCCGTAAATCCAAACGCTCCAACAAACCCGCCAAAACCTCCGACGCCGCCCCCCCGCCCCCGCCGCCCGACCCGGACCATTCCAGCAGCGAGAGCTCGAGCCTGACCGCCGCTGCCGCGGAGCCCGTATCGGCGCCGATAAACTCCGATTCCACCAACATGCAAGAGTCGAAGTTGTCGGTCCCCGTGGATCCTGTTTTGGGAACGAATCCTCTGGAGCAGGGAGCAGGGGACTGCGGTGGTATCTTCTCAGAGATTGGACCTTTCACCAGCCTGATCGCTACTTCCACTAACGAGCCCTTGGGTTTCGGTTTCGGCAACGGTCTGCCCGATGCGTCGTCGTTTCAGTGGCAGCACTCGAAGGTGAGCAGCAACCAGGAATTGAAGTTGGCCGAAAGCTCCTTCCTCGATCACACCGTTGATTTGTCGACTCTGCATGGTAAAACCAACCACGGAACATTCGGATCGTTGGATTGGCAGGGCGGTGCGGATCAAGGTTTGTTTGATCTCCCTAACACCGTTGATCACGCTTACTGGAGTCACACTCACTGGTCTGACCACGACAATTCTTCTCTCTTCCATCTCCCCTGA 858 0.5909 MQQIHSMAPGTAGGGGGARFFSGTASADRRVRPHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPAKTSDAAPPPPPPDPDHSSSESSSLTAAAAEPVSAPINSDSTNMQESKLSVPVDPVLGTNPLEQGAGDCGGIFSEIGPFTSLIATSTNEPLGFGFGNGLPDASSFQWQHSKVSSNQELKLAESSFLDHTVDLSTLHGKTNHGTFGSLDWQGGADQGLFDLPNTVDHAYWSHTHWSDHDNSSLFHLP 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00859 285 Pfam Dof domain, zinc finger 39 95 IPR003851 GO:0003677|GO:0006355
Vian1g00859 285 MobiDBLite consensus disorder prediction 1 22 - -
Vian1g00859 285 ProSitePatterns Zinc finger Dof-type signature. 43 79 IPR003851 GO:0003677|GO:0006355
Vian1g00859 285 ProSiteProfiles Zinc finger Dof-type profile. 41 95 IPR003851 GO:0003677|GO:0006355
Vian1g00859 285 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 30 205 IPR045174 GO:0003700|GO:0006355
Vian1g00859 285 MobiDBLite consensus disorder prediction 85 147 - -
Vian1g00859 285 MobiDBLite consensus disorder prediction 117 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00859 Vian-Chr1 8939757 8940614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00859 28 282 C2C2-Dof Transcription Factor Family AT5G60850 45.263 1.55e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian1g00859 zf-Dof 2.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00859 - - gmx:778097 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00859 1 8939757 8940614 Vian4g00583 4 6972341 6973303 PCT