Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00852 ATGGGAAGAGGGAGGGTTGAACTGAAGAGGATAGAGAACAAAATCAACAGGCAAGTCACATTTGCCAAGAGAAGAAATGGCTTGCTCAAGAAGGCCTATGAGCTCTCAGTCCTTTGTGATGCTGAGGTTGCCCTCATCATCTTTTCCAACCGTGGCAAGCTCTATGAGTTCAGCAGCACCTCCAGTATGATGAAAACACTGGAGAAGTACCAGAAGTACAGTTACAGTGCACTGGAGACCACCCGACCAATTAACGACATTCAGAACTACCAGGAATATTTGAGATTAAAAGCAAGGGTAGAAGTCTTGCAACGATCACAAAGGAACCTACTTGGGGAAGATCTTGCCCAAATGAATACAACTGATCTTGAGCAGCTAGAGAATCAACTAGAGGTAGCACTGAAGAATATTAGGTCAACAAAGACTCAATTCATGCTTGACCAGCTTGCTGATCTTCACCACCGGGAAACATTGCTAGTTGAAACTAACAATGTGTTAAGGAGTAAGTTGGAAGAAAGTAATAACTCACAAGTGAGTCTGGCTTTGGAAGCTGGAGGACCTAACATCCATTACACAAACTTTCCTCCTCAAACAGAGGGATTCTTCCAACCAGCAGGAGTGAATTCCAACTTGCAAATCGGATTCAACCAGATTGGTGGTGATGATGCAAACGTTGGAGCTTCATCCTTGAGTATGCATGGATTCGCCTCTGGGTGGATGCTTTGA 726 0.4421 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSMMKTLEKYQKYSYSALETTRPINDIQNYQEYLRLKARVEVLQRSQRNLLGEDLAQMNTTDLEQLENQLEVALKNIRSTKTQFMLDQLADLHHRETLLVETNNVLRSKLEESNNSQVSLALEAGGPNIHYTNFPPQTEGFFQPAGVNSNLQIGFNQIGGDDANVGASSLSMHGFASGWML 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00852 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian1g00852 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian1g00852 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Vian1g00852 241 Coils Coil 116 143 - -
Vian1g00852 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vian1g00852 241 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vian1g00852 241 Pfam K-box region 88 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian1g00852 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vian1g00852 241 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian1g00852 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian1g00852 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian1g00852 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian1g00852 241 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Vian1g00852 241 FunFam MADS-box transcription factor 1 13 88 - -
Vian1g00852 241 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00852 Vian-Chr1 8878666 8883063 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vian1g00852 K-box 9.6e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00852 1 8878666 8883063 Vian4g00589 4 7057016 7064323 ECH
Vian2g00270 2 2813126 2818337 Vian1g00852 1 8878666 8883063 ECH
Vian1g00852 1 8878666 8883063 Vian1g00852 1 8878666 8883063 ECH