Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00398 ATGGTTTTCTCTTCTATTCCAGTCTATTTAGATCCTCCCAATTGGCAGCAACAACAAAATCAACATCAGGCAAATGGCAGTAACAGTCCTCAGATGCTTCCCACCATGCCTCAACACCCACAGGAACCTCACGTCGGAGTTCATGAAGCTGCAGGCTCAATCCGGCCCGGTTTGATGGCGGATCGGTCTAAGATTCCGGCCCAGGAAGGAGCTCTCAAGTGTCCTCGCTGTGAATCCACCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCGCGGCACTTTTGCAAGACTTGTAGGCGTTATTGGACAAGAGGTGGCGCTCTCAGGAACGTTCCTGTCGGTGGAGGATGCCGTAGGAACAAGAAGAACAAAAGGAGTCGCTCCAAATCTCCGGTTCCTACTGAGAAATCATCACTTCCCAATCCCACAAACGCTATGCCTGAGCTTATTGGTCGATTCCCACAACCTTTCATGGCCTCTCTTCAGAGTATGAACCGCTATGGTGCAGGGAACGCTGGTGTTAACTTGCGTGAGATGCAAGCTCAGAACGGTTCGCATATGGGGTTTCAAATTGGTGGTCAGGGTCATGGTTCAAGTGTTACTGCTGCTGGAGGAGGATTGGAACAGTGGCGGTTTCAGCAATTTCCTTTCTTGAATGGTTTTGACTCAGCTTCTGCTGTTTCTTCCTACCCTTTTCAAACTGAAAGTGTTGAAGGTCTGGTTGGAGATATTGCCGCAAGTTCTAGGGTTAATCAGCTGCCACCACGAGTTAAATTGGAATACAACGGTGGTTTGAATTTGTCAAGATCTCCTTTGAGTGTGTCAGAAAATAGTAACCATTACTACTCATGGACGGATTTATCCGGTCTTGCATCTTCTTCCGCTAGTCATCTCTTGTAA 912 0.477 MVFSSIPVYLDPPNWQQQQNQHQANGSNSPQMLPTMPQHPQEPHVGVHEAAGSIRPGLMADRSKIPAQEGALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPVPTEKSSLPNPTNAMPELIGRFPQPFMASLQSMNRYGAGNAGVNLREMQAQNGSHMGFQIGGQGHGSSVTAAGGGLEQWRFQQFPFLNGFDSASAVSSYPFQTESVEGLVGDIAASSRVNQLPPRVKLEYNGGLNLSRSPLSVSENSNHYYSWTDLSGLASSSASHLL 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00398 303 Pfam Dof domain, zinc finger 71 126 IPR003851 GO:0003677|GO:0006355
Vian11g00398 303 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 38 202 IPR045174 GO:0003700|GO:0006355
Vian11g00398 303 MobiDBLite consensus disorder prediction 116 153 - -
Vian11g00398 303 MobiDBLite consensus disorder prediction 12 35 - -
Vian11g00398 303 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677|GO:0006355
Vian11g00398 303 MobiDBLite consensus disorder prediction 12 44 - -
Vian11g00398 303 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00398 Vian-Chr11 3714882 3715957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00398 8 222 C2C2-Dof Transcription Factor Family AT3G55370 40.664 4.69e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian11g00398 zf-Dof 2.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00398 - - gmx:100775899 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00398 11 3714882 3715957 Vian5g01300 5 35728467 35729596 PCT