Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00353 ATGGCTGAGAAAGAGACTATGTATTCATTAGGTGATTGGAGGAGAATACCAATTTGCACTTTCTTTAAGGATGCAAGACTGGTTTTCAAAGCAGACAGTCTTGGTCGGGAAATTTTGTCAATTGCATTGCCTGCAGCAATGGCTTTGACAGCTGATCCTATTGCTTCATTGGTTGACACAGCATTTATTGGCCAAATAGGGCCAGTAGAGCTTGCTGCTGTAGGAGTTTCAATAGCTCTCTTCAATCAAGTATCAAGGATTGCAATATTCCCACTTGTCAGTGTCACCACTTCTTTTGTGGCTGAGGAAGATACCCTTAGTGGAGCAAGTCCTCAGATAGAGGAGGGTAAATGCTTGGAAGCTGGTGGACCTGTGGATACTGAAACCAAAGAGTTATTACCACAGAGAGTTACAGGTAGAAATGTTCGCAATTCAGATTCTGTTGGTGAATCTTTGAATATAGTTAAGGAGGATCACAAGAGAAGGCATATCCCTTCAGCTTCATCGGCATTATTTATTGGTGGTGTCCTTGGCCTCATCCAAGCAATATTTCTTATATCTGCCGCAAAACCTTTATTGAACTTCATGGGAGTAACTTCTGACTCTCCTATGCTACACCCTGCACAACAGTATCTGAGATTGAGGTCCCTCGGTGCTCCTGCCGTTCTTCTCTCCTTGGCAATGCAAGGAGTGTTCCGAGGATTTAAAGACACGAAAACACCTTTATATGCCACTGTTGCAGGAGATGCAACTAACATAGCATTGGATCCTTTATTCATGTTTGTATTCCGCTTGGGTGTCAGTGGTGCAGCCATTGCCCACGTTATATCTCAGTACCTAATTTCAGCTATACTCCTATGGAGGTTGGTGCAACAAGTTGACCTTATACCTCCGAGCATAAAACATCTGCAATTAGACCGTTTTCTTAAAAATGGTTTTCTATTACTAATGAGAGTAGTCGCTGTAACATTTTGTGTGACATTGGCTGCATCATTAGCTGCACGGCAAGGATCAACGTCCATGGCTGCATTTCAAGTCTGTCTGCAGGTTTGGTTGGCAGTGTCTCTTCTTGCTGATGGTCTGGCAGTTGCAGGGCAGGCTATTCTTGCTGGTGCATTTGCTAATAAGGACTTCAACAGGGCATCGGCAACTGCATCCCGAGTTGTGCAGATGGGTTTAGTTCTAGGATTGGCACTTGCATTCATTCTTGGAACAGGATTGCACTTTGGAGCTAAAATATTTACAAAAGATGCTGATGTTCTCCACCTCATTCAAATTGGAATCCCGTTTGTGGCAGTCACTCAACCTTTGAATTCTTTAGCATTTGTATTTGATGGTGTCAACTTTGGAGCTTCTGATTTTGCATATTCAGCCTTCTCCATGGTTGTGGTGGCAATTCTAAGCATTATTTGTCTGCTTATTTTGTCATCCGCGGGTGGTTTCATTGGTATTTGGGTTGCTTTGACCATCTATATGGGTCTTAGGGCATTTGCTGGCTTCTTGAGGATTGGAACAGGATCAGGACCGTGGGAGTTCCTAAGGAGCTCATAA 1551 0.4339 MAEKETMYSLGDWRRIPICTFFKDARLVFKADSLGREILSIALPAAMALTADPIASLVDTAFIGQIGPVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDTLSGASPQIEEGKCLEAGGPVDTETKELLPQRVTGRNVRNSDSVGESLNIVKEDHKRRHIPSASSALFIGGVLGLIQAIFLISAAKPLLNFMGVTSDSPMLHPAQQYLRLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDATNIALDPLFMFVFRLGVSGAAIAHVISQYLISAILLWRLVQQVDLIPPSIKHLQLDRFLKNGFLLLMRVVAVTFCVTLAASLAARQGSTSMAAFQVCLQVWLAVSLLADGLAVAGQAILAGAFANKDFNRASATASRVVQMGLVLGLALAFILGTGLHFGAKIFTKDADVLHLIQIGIPFVAVTQPLNSLAFVFDGVNFGASDFAYSAFSMVVVAILSIICLLILSSAGGFIGIWVALTIYMGLRAFAGFLRIGTGSGPWEFLRSS 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00353 516 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 10 515 IPR044644 -
Vian11g00353 516 NCBIfam MATE family efflux transporter 44 485 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian11g00353 516 Pfam MatE 318 470 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian11g00353 516 Pfam MatE 166 258 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian11g00353 516 CDD MATE_DinF_like 34 505 IPR044644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00353 Vian-Chr11 3335962 3339673 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00353 11 3335962 3339673 Vian5g00070 5 1261715 1267787 ECH
Vian11g00353 11 3335962 3339673 Vian11g00353 11 3335962 3339673 ECH
Vian11g00353 11 3335962 3339673 Vian5g01355 5 36155631 36158859 PCT