Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01751 ATGGCCACTGTTGCAACTACAGGAATTGGAGTAGGAGTGACCAAGCTCCAACAACACCAAAAGCCCAGGCAGAAGTCCTTGTTTCTTGGCCAGAGGCTTAGGATTCGACCCTCTGGGGAGGCTCAATGCAGTTCAAGATTGAATTTTTCAAACCCAACAAGAGTGGTTAAAGTTTTTGCACCAGGGGGTGAATGGATTGACACAGTTCACAACCTTTTTGTGGGTGTTGGGGTTGGACTTCCTTGCAGTGTGATGCAGTGTGGGGATGTAATCTATAGGAGCACTCTTCCCAAGTCCAATGGCTTGACTCTTACTGTCCCTGGGGTGATTCTGGCTTTGGGTACTCTATCTTACCTTTGGGCCACACCTGGTGTGGCACCTGGTTTCTTTGACATGTTTGTTCTTGCCTTTGTTGAGAGGTTGTTCCGACCAAGTTACAAGAAGGATGATTTTGCTCTGGGGAAGAAGTTGGGGGAAGGATCATTTGGAGTGGTTTATAGAGTGTCACTGGCCAACAAACCCTCTTCGAAGGAAGGTGACTTAGTCTTGAAGAAGGCGACTGAATATGGTGCTGTAGAAATTTGGATGAATGAGCGTGTACGAAGAGCTTGTGCAAGCAGCTGTGCAGATTTTGTCTATGGTTTTCTTGAGAGCTCTTCAAAGAAATCTGCTGAATACTGGCTTATATGGCGGTTTGAAGGGGATGCCACCCTAGCTGACTTGGTGCAGAGTAGAGAGTTTCCATATAATGTTGAAACATTAATTTTAGGTGAGGTTCAAGACTTGCCCAAGGGATTAGAAAGAGAAAATAGAATCATTCAGACAATCATGAGGCAGATCTTGTTTGCACTGGATGGTCTTCACTCAACTGGTATTGTGCATAGGGATATTAAGCCACAGAACATTATTTTCTCCGAAGAGTCTCGGACATTCAAAATCATTGATCTTGGAGCTGCTACAGACCTGCGAGTGGGCATAAACTACATTCCAAAGGAGTTTCTTTTGGATCCAAGATATGCTGCACCAGAGCAATACATCATGAGCACACAAACTCCTTCAGCACCCTCAGTTCCAGTTGCAACTGCACTTTCCCCAGTCTTATGGCAGTTGAATTCGCCAGACAGATTCGACATCTATAGTGCTGGTTTAATCTTTCTACAAATGGCTTTCCCTGGTCTACGGACTGATAATAGCCTCATTCAATTCAACCGTCAATTAAAGAGGTGTGACTATGACATAGTTGCATGGAGAAAAACTGTAGAGCCTCGATGCGGCCCTGAACTAAGGAGGGGTTTTGAGCTGTTGGATTTGGATGGTGGAATAGGATGGGAACTTCTAAAATCAATGGTAAGGTACAAAGCAAGACAAAGACTGAGTGCAAAAGCAGCATTGGCTCATCCTTACTTTGACAGAGAAGGCTTGTTGGCATTGTCTTTCATGCAAACACTGAGGCTGCAGCTCTTGCGGGCAACTCAACAGGACTATGGAGAAGCTGCCAAGTGGATTACTAATCTAATGGCAAAATCAGGGACTCAGAAGGATGGTGGATTCACTGAAGCTCAACTTCAGGAACTAAGAGAAATCGAACCCAAAATGAAGGCCAGTGCACCAAGGAATGCTCTAGCTTCAGCTCTTAAACTTCAGAGGAAAATTATAAGAACCTTAAATGAGAGTATGGATGAGCTCAACAGACGTAGGAAAAGCTTTTGGTGGAGCAGATGGATCCCAAGAGAAGAATGA 1740 0.4466 MATVATTGIGVGVTKLQQHQKPRQKSLFLGQRLRIRPSGEAQCSSRLNFSNPTRVVKVFAPGGEWIDTVHNLFVGVGVGLPCSVMQCGDVIYRSTLPKSNGLTLTVPGVILALGTLSYLWATPGVAPGFFDMFVLAFVERLFRPSYKKDDFALGKKLGEGSFGVVYRVSLANKPSSKEGDLVLKKATEYGAVEIWMNERVRRACASSCADFVYGFLESSSKKSAEYWLIWRFEGDATLADLVQSREFPYNVETLILGEVQDLPKGLERENRIIQTIMRQILFALDGLHSTGIVHRDIKPQNIIFSEESRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSVPVATALSPVLWQLNSPDRFDIYSAGLIFLQMAFPGLRTDNSLIQFNRQLKRCDYDIVAWRKTVEPRCGPELRRGFELLDLDGGIGWELLKSMVRYKARQRLSAKAALAHPYFDREGLLALSFMQTLRLQLLRATQQDYGEAAKWITNLMAKSGTQKDGGFTEAQLQELREIEPKMKASAPRNALASALKLQRKIIRTLNESMDELNRRRKSFWWSRWIPREE 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01751 579 ProSitePatterns Protein kinases ATP-binding region signature. 157 184 IPR017441 GO:0005524
Vian10g01751 579 Coils Coil 545 565 - -
Vian10g01751 579 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 56 554 - -
Vian10g01751 579 CDD STKc_SNT7_plant 155 469 - -
Vian10g01751 579 SUPERFAMILY Protein kinase-like (PK-like) 147 474 IPR011009 -
Vian10g01751 579 ProSiteProfiles Protein kinase domain profile. 151 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01751 579 Gene3D Transferase(Phosphotransferase) domain 1 260 473 - -
Vian10g01751 579 SMART serkin_6 151 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01751 579 Pfam Protein kinase domain 153 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01751 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 292 304 IPR008271 GO:0004672|GO:0006468
Vian10g01751 579 FunFam Serine/threonine-protein kinase STN7, chloroplastic 260 474 - -
Vian10g01751 579 Gene3D Phosphorylase Kinase; domain 1 138 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01751 Vian-Chr10 29198009 29206085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01751 269 470 Core Cell Cycle Gene Families AT2G38620 30.986 2.14e-17 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Vian10g01751 Pkinase 1.1e-19 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01751 10 29198009 29206085 Vian10g01751 10 29198009 29206085 ECH