Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01746 ATGTTCCCTGAAGTTACTCCAATCATGCAACCATGGTCCATGCCTCCGGTTCACTCATTCAACCCGGGTCCGGTTCACTACAACCATATTAACACCAACCCTGTCAGAGACCATCATGACCAAACGTTTATAGTCCCTCCCACACCTTCACCCTATGCGAGCTTCTTCAGCAGAAGGGTCCCTTCTCTACAATTTGCATACGAGAGTCCTTCTTCTGATCTCCACCATCTAAGGATCATATCTGACACCCTCGGACCTATGGTTCAACCCGGTTCAGCACCCTTTGGACTCCAAGCCGAGTTGGGAAAAATGACTGCTCAAGAAATCATGGAGGCTAAGGCTCTTGCTGCATCAAAGAGTCACAGTGAAGCAGAAAGAAGACGTAGAGAGAGAATCAACAACCATCTTGCCAAGCTTCGGAGTTTATTGCCCAACACTACAAAAACAGATAAAGCTTCGCTGCTAGCAGAAGTGATTCAGCACGTGAAGGAGCTGAAGCGGCAAACCTCTCTGATAGCAGAAAGCAGTGCAGTGCCAACCGAGGCAGACGAGTTGACAGTAGATGCAGCAGACGAAGATGGAAAGTTTGTGATCAAAGCCTCACTGTGCTGTGAAGATAGATCAGATCTCTTACCCGACCTCGTAAAAACGTTGAAGGCCTTGAAGCTGAGAACCCTCAAGGCTGAGATCACATCGCTTGGTGGGCGTGTGAAGAACGTGTTGGTCATTGCTGGTGACGAAGAAAGTTCAAACACCAATGGAGAACAAAGCATTCAGCAGCAACAACAACAATACTGTATTACCTCAATACAAGAAGCACTGAAGGCAGTGATGGAGAAGAGTGGTGGTGGAGATGAATCAGCTTCTGGGATTGTTAAGCGCCAAAGGACTAATAATACCAATTTTCTTGAACAAAGATCTTTGTAA 927 0.4671 MFPEVTPIMQPWSMPPVHSFNPGPVHYNHINTNPVRDHHDQTFIVPPTPSPYASFFSRRVPSLQFAYESPSSDLHHLRIISDTLGPMVQPGSAPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAESSAVPTEADELTVDAADEDGKFVIKASLCCEDRSDLLPDLVKTLKALKLRTLKAEITSLGGRVKNVLVIAGDEESSNTNGEQSIQQQQQQYCITSIQEALKAVMEKSGGGDESASGIVKRQRTNNTNFLEQRSL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01746 308 CDD bHLH_AtAIG1_like 111 189 - -
Vian10g01746 308 PANTHER TRANSCRIPTION FACTOR BHLH30 84 301 IPR045847 GO:0003700|GO:0006355
Vian10g01746 308 MobiDBLite consensus disorder prediction 291 308 - -
Vian10g01746 308 Gene3D - 111 172 IPR036638 GO:0046983
Vian10g01746 308 MobiDBLite consensus disorder prediction 278 308 - -
Vian10g01746 308 Pfam Helix-loop-helix DNA-binding domain 119 165 IPR011598 GO:0046983
Vian10g01746 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 165 IPR011598 GO:0046983
Vian10g01746 308 FunFam transcription factor bHLH30 111 174 - -
Vian10g01746 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 172 IPR036638 GO:0046983
Vian10g01746 308 SMART finulus 122 171 IPR011598 GO:0046983
Vian10g01746 308 CDD ACT_UUR-ACR-like 201 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01746 Vian-Chr10 29159918 29162275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01746 52 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 66.667 4.29e-106 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian10g01746 HLH 2e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01746 10 29159918 29162275 Vian10g01746 10 29159918 29162275 ECH