Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01744 ATGTATTCTTCACTCGACTCTTTCCTGTCCTTGATCTTCTTCTTCACCATTCTCTCCCTTACACATTCGTCAACCGAGTACCTCAAGCTACCGTTAATCCCTCGAACAACACTCTCCAACGTCTCCAACATCCTCGCCGCCGACCTCCACCGCATCTCCGGCCTCCGTACTTTGCCTCAGTCTCCGCTCACCTCCGGCGCCGCCATGGGCTCCGGGCAGTACTTTGCGGACCTCCGCATCGGATCCCCGCCGCAGCGCCTCCTCCTGGTAGCCGACACCGGCAGCGACCTTGTCTGGGTGAAATGCTCCGCCTGCCGTAACTGCTCCACCAAGCGACCCGGATCCGCATTCCTGCCCCGACATTCCAGAAGCTTCTCCTCCTACCACTGCTACGACTCGCCGTGTCGATTCGTCCCTCAGCCCACACCCACACACTGTAACAACCGCACCAAACTCCACACACCCTGCCGCTACGAATATTCCTACGCGGATGGGTCCACAACAACGGGCTTCTTCTCCAAGGAAACGACGACGTTCAACACCAGCTCCAACAAACAAGGGAAAATTAAAAACCTGGCATTCGGGTGCGGGTTTAAAACCTCTGGCCCCAGTGTAACAGGCTCCAGCTTCAACGGCGCGCAGGGCGTAATGGGACTGGGCCGCGGGCCCATTTCGTTTACTTCCCAACTTGGCCGCAAATTTGGTAACACCTTCTCTTACTGTCTTCTCGACTACACCCTATCCCCGGCCCCAAAAAGCTACCTTACAATCGGCGCCTCCTCAAACGACGTCATTTCGCGGAAGCTGTTCAGTTACACGCCTTTTGCCACTAACCCTCTGTCTCCCTCGTTTTATTACATCACCATCCAGAGTGTCTCCGTTGACGGCATTAGGTTACCGATAAACACTTCCGTTTGGGGGATCGATGACAACGGAAACGGAGGCACCGTCCTGGACTCCGGCACCACGATTTCTTTTCTAGCGGAGCCAGCTTATAGGCAGGTTTTGGCCGCCTTCCGGCGGCGCGTGAAGCTTCCTGCGGCGGAGGGAGCCACCGCGCTCGGGTTCGACCTTTGTGTTAACGTCTCCGGCATCACAAGGCCGAGGCTGCCGAAGCTGAGATTCTTCCTTGCCGGAAAATCGGTGCTGTCGCCACCGGCAGGGAATTATTTTATTGAGCCGGCGGATGGAGTAAAGTGTCTCGCGGTTCAGGCAGTTCGACCGGGTTCTGGATTTTCTGTGATTGGGAATTTGATGCAGCAAGGGTACTTGTTTGAGTTCGATTTGCACCGGTCGCGGATCGGGTTCTCGCGTCACGGATGTGCGGTTCGCTAA 1335 0.5633 MYSSLDSFLSLIFFFTILSLTHSSTEYLKLPLIPRTTLSNVSNILAADLHRISGLRTLPQSPLTSGAAMGSGQYFADLRIGSPPQRLLLVADTGSDLVWVKCSACRNCSTKRPGSAFLPRHSRSFSSYHCYDSPCRFVPQPTPTHCNNRTKLHTPCRYEYSYADGSTTTGFFSKETTTFNTSSNKQGKIKNLAFGCGFKTSGPSVTGSSFNGAQGVMGLGRGPISFTSQLGRKFGNTFSYCLLDYTLSPAPKSYLTIGASSNDVISRKLFSYTPFATNPLSPSFYYITIQSVSVDGIRLPINTSVWGIDDNGNGGTVLDSGTTISFLAEPAYRQVLAAFRRRVKLPAAEGATALGFDLCVNVSGITRPRLPKLRFFLAGKSVLSPPAGNYFIEPADGVKCLAVQAVRPGSGFSVIGNLMQQGYLFEFDLHRSRIGFSRHGCAVR 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01744 444 Gene3D Acid Proteases 259 443 IPR021109 -
Vian10g01744 444 PRINTS Pepsin (A1) aspartic protease family signature 80 100 IPR001461 GO:0004190|GO:0006508
Vian10g01744 444 PRINTS Pepsin (A1) aspartic protease family signature 316 327 IPR001461 GO:0004190|GO:0006508
Vian10g01744 444 PRINTS Pepsin (A1) aspartic protease family signature 413 428 IPR001461 GO:0004190|GO:0006508
Vian10g01744 444 SUPERFAMILY Acid proteases 68 441 IPR021109 -
Vian10g01744 444 Gene3D Acid Proteases 57 258 IPR021109 -
Vian10g01744 444 ProSiteProfiles Peptidase family A1 domain profile. 74 437 IPR033121 -
Vian10g01744 444 Pfam Xylanase inhibitor N-terminal 74 258 IPR032861 -
Vian10g01744 444 FunFam Aspartyl protease family protein 2 56 258 - -
Vian10g01744 444 FunFam Aspartyl protease family protein 266 443 - -
Vian10g01744 444 Pfam Xylanase inhibitor C-terminal 285 437 IPR032799 -
Vian10g01744 444 CDD pepsin_A_like_plant 73 441 IPR034161 -
Vian10g01744 444 PANTHER OS07G0603500 PROTEIN-RELATED 47 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01744 Vian-Chr10 29132442 29133776 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01744 64 441 Miscellaneous Gene Families AT1G77480 25.255 5.07e-24 102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01744 10 29132442 29133776 Vian10g01744 10 29132442 29133776 ECH