Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01626 ATGACACGTCATTTCCTCCTTTCTCTGTTATTATTTGCGTCCACACTCTCTCGTCTCGTCCTAACTGTCACCGCCGGCCACGCTTCCGGTTTCACTTCCGGTGACGCTTCCGGTGACACCGACTTCATTCGCGAAAGCTGCAACGCAACGTTGTACCCTGACCTATGCTTCTCCTCGCTCTCTCGCTACGCCGCCGCGGTGCAACGTAGCCCCGGCGGCCTCGCGCGGGTGGCCGTGGCCGTGGCGCTTGCTAAGGCGCACGGCGCGGCGGCCTATCTCTCGCACCAGACCGCTACGGTGGTCGATGAGGATTCCGGCGCAGGTGCCGGCGCCGCCGTGAACGACTGCTTCGCTAACCTGGAGGACGCTGTGGACGAGATCCGCGGCTCGTTGAAGCAGATGCGGCGACTGAGACCGAACGAGGACTCCGGTTCGGTCCGGTTCGGGGTGAGCAACGTGCTGACGTGGATGAGCGCGGCGCTGACGGACGAGGAAACGTGCACGGACGGGTTCGAGGGCGTAGAAGAAGGTCCCGTGAAGAGGAGCGTATGCGATCGAGTAACCAGAGTGAAGAAGTTCACAAGCAATGCTTTGGCGCTGGTGAACGGTTTCGCTAATAAGTTATAA 627 0.6093 MTRHFLLSLLLFASTLSRLVLTVTAGHASGFTSGDASGDTDFIRESCNATLYPDLCFSSLSRYAAAVQRSPGGLARVAVAVALAKAHGAAAYLSHQTATVVDEDSGAGAGAAVNDCFANLEDAVDEIRGSLKQMRRLRPNEDSGSVRFGVSNVLTWMSAALTDEETCTDGFEGVEEGPVKRSVCDRVTRVKKFTSNALALVNGFANKL 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01626 208 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 204 IPR035513 -
Vian10g01626 208 Coils Coil 117 137 - -
Vian10g01626 208 CDD PMEI-like_3 46 206 - -
Vian10g01626 208 PANTHER PECTINESTERASE INHIBITOR-LIKE 9 200 - -
Vian10g01626 208 SMART PMEI_2 38 200 IPR006501 GO:0004857
Vian10g01626 208 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 204 IPR035513 -
Vian10g01626 208 NCBIfam pectinesterase inhibitor domain 15 202 IPR006501 GO:0004857
Vian10g01626 208 Pfam Plant invertase/pectin methylesterase inhibitor 41 200 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01626 Vian-Chr10 27277192 27277818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01626 5 200 Carbohydrate Esterase AT3G49220 28.713 2.25e-15 72.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01626 10 27277192 27277818 Vian10g01626 10 27277192 27277818 ECH