Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01542 ATGTCGTATCAATCAATGGAGGAGAGAAAGTTTGTTTGCAAGTATTGCAGCAAGAGGTTCCCGTGTGGGAAGTCTCTCGGTGGCCACATCAGAACTCACATGATGAGTGAGAATTCAGCTTTAGGTAATGCAGAGAGGAGCAATGCTACTAATGGTATGTTCAAGTTGAATGGCCGGGGAAAGAGGAAGAGAGATTTGGGGTCTGAAGAAAACGGTGGTGGTGGCGGTGGTGGGGCTACTTATGGTCTTAGAGAGAACCCCAAGAAGACCACGAGGTTTGTACATTCCAATTCCAGTTTGCAGCTTGAAAAGTTCTGCAAAGAATGTGGGAAGGGATTTCTGTCATTGAAGGCTCTTTGTGGCCACATGGCTTGCCACTCTGAAAAGGACAAGGGAGGCAATAGGTTTGAGAGCAGTTCTAGTGGGTTTGCTGAGAAGCAGAAATTGGCTATGGACAGTCAATCTGACACTGAAACTTCTACGCCAAGGAGGTCCAAGAGAAAGAGGTTCAAGACCCTTAGCAATAGCAACAACCAAGCTCAATCTTCTGTTTCGGAGGTTGAGCAGGGTCAGGAAGAGGTGGCTAGGTGTTTGATGATGTTGTCCAAGGATTCTAGCTATAAGGGTCGTTTTTCTTTGTTCACAGAGTCTTCTGATAACAACTCGGTTGTTCTAGAGGTTAAGTCACCTTCACCGGACACCAAGGTTACTATGATGAATAGTGATGGTAAGAACTTTGTGTCTGGTGCTTATGTGGAGAAGAAGTTGGAGCAGTCCAAGGAGTTTAAGTATGCTGAAGTTGGCTATGATTCTGATAATTCAGATTCTGGGTATTTTCGATATGGTCCTAAGGAGGTTGACTCCACTGATTCAAATAATGGGAATTTCAAGAATGAGGTTCAGTCTTCGAAAGTGGGGTGCTTTTCTGGGTTTGAGGATTATGATGTTGAGTCAAGGAAAGTGCCAAGCAGGAGCGTTGAATTCAAGAAATTTGTTGTGGAGAATTGGGAGAATGATAGACAAGATGGTGGAGCTGCAAGGAAATTTGATTCAAAGAAAAGTAAGAAACCCAACTATGACTCTCTTGGGCAGAATTTAGTAAGGGTTTCTAGCAGGAAGATGGGGAATGGTTCTGCCAATGATAAGGTGAACAAGTACGAGTGCTTAACCAGTGAAAGAGACAATGGTTATGATGATTCTGCTTATGAGAGTGATGAAAACAGCACAGACAGTGATTCTTATCCAGCTCCGAAGGCTTACAGCAAGAGGAACCTCAGTGGCCAAAAGGGGAAGAAGAAATTGAAGTCAAAGAAAAGCAAGGCACATGAATGCCCAATCTGCAACAAAATTTTCAGGTCAGGCCAAGCCTTGGGGGGTCATAAGAGATCCCATTTTATTGGAGGTTCTGAAGAGAACACCCTAGTGATAAGACCAGGAGCTGCTGCTGTTCCTTGCCTCATTGATCTCAACTTACCAGCACCAGTTGATGAATAG 1494 0.4418 MSYQSMEERKFVCKYCSKRFPCGKSLGGHIRTHMMSENSALGNAERSNATNGMFKLNGRGKRKRDLGSEENGGGGGGGATYGLRENPKKTTRFVHSNSSLQLEKFCKECGKGFLSLKALCGHMACHSEKDKGGNRFESSSSGFAEKQKLAMDSQSDTETSTPRRSKRKRFKTLSNSNNQAQSSVSEVEQGQEEVARCLMMLSKDSSYKGRFSLFTESSDNNSVVLEVKSPSPDTKVTMMNSDGKNFVSGAYVEKKLEQSKEFKYAEVGYDSDNSDSGYFRYGPKEVDSTDSNNGNFKNEVQSSKVGCFSGFEDYDVESRKVPSRSVEFKKFVVENWENDRQDGGAARKFDSKKSKKPNYDSLGQNLVRVSSRKMGNGSANDKVNKYECLTSERDNGYDDSAYESDENSTDSDSYPAPKAYSKRNLSGQKGKKKLKSKKSKAHECPICNKIFRSGQALGGHKRSHFIGGSEENTLVIRPGAAAVPCLIDLNLPAPVDE 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01542 497 SUPERFAMILY beta-beta-alpha zinc fingers 7 35 IPR036236 -
Vian10g01542 497 SMART c2h2final6 104 126 IPR013087 -
Vian10g01542 497 SMART c2h2final6 11 33 IPR013087 -
Vian10g01542 497 SMART c2h2final6 442 464 IPR013087 -
Vian10g01542 497 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Vian10g01542 497 ProSiteProfiles Zinc finger C2H2 type domain profile. 11 38 IPR013087 -
Vian10g01542 497 ProSiteProfiles Zinc finger C2H2 type domain profile. 442 464 IPR013087 -
Vian10g01542 497 MobiDBLite consensus disorder prediction 172 187 - -
Vian10g01542 497 Gene3D Classic Zinc Finger 2 131 - -
Vian10g01542 497 MobiDBLite consensus disorder prediction 358 378 - -
Vian10g01542 497 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 6 497 - -
Vian10g01542 497 MobiDBLite consensus disorder prediction 342 438 - -
Vian10g01542 497 MobiDBLite consensus disorder prediction 342 357 - -
Vian10g01542 497 ProSitePatterns Zinc finger C2H2 type domain signature. 13 33 IPR013087 -
Vian10g01542 497 MobiDBLite consensus disorder prediction 50 86 - -
Vian10g01542 497 SUPERFAMILY beta-beta-alpha zinc fingers 105 464 IPR036236 -
Vian10g01542 497 Pfam C2H2-type zinc finger 106 128 - -
Vian10g01542 497 Pfam C2H2-type zinc finger 441 464 - -
Vian10g01542 497 Pfam C2H2-type zinc finger 11 34 - -
Vian10g01542 497 MobiDBLite consensus disorder prediction 128 187 - -
Vian10g01542 497 MobiDBLite consensus disorder prediction 136 158 - -
Vian10g01542 497 MobiDBLite consensus disorder prediction 386 400 - -
Vian10g01542 497 ProSitePatterns Zinc finger C2H2 type domain signature. 444 464 IPR013087 -
Vian10g01542 497 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01542 Vian-Chr10 26216023 26217516 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian10g01542 zf-C2H2_6 1e-10 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01542 10 26216023 26217516 Vian10g01542 10 26216023 26217516 ECH