Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01462 ATGAAGATTAGTTGTAATGGTTGTCGCATTCTTCGCAAAGGTTGTACCGAGGACTGTGTCATTAGGCCATGTCTTGAATGGATAAACTCCTCCGAGGCACAAGCTAATGCCACCCTTTTCCTTTCTAAGTTCTATGGTCGTGCCGGCTTGCTCAACCTCATCAATGCTGCCCCACAACAACATCGGACTGATGTTTTCAAGTCACTGATGTATGAGGCCTGTGGGAGAATCATAAACCCAACATTTGGATCAGTTGGGTTATTTTGGAGTGGTGAGTGGGCCCAATGTCAAGCTGCTGTTGATGCTGTGCTAGCTGGGTCCCAGATCAATGTCATGCCAACATCTCATTCGCAAAGCGACCATGGTTCGAAACTCCTTGACATACGACATGTGTCTAAAGATGCCAACATGGACAAGGTGAGAGGAAAATCTAAGAAGCACAAGGATGTTATGATGCCAATGTCACATGTGGGTTTAGTCAACTCAGCTACATTATGGAATCCAATTTTAAGTCATGAGCCAAGACGGTTAGAGGGTGGTAATGGAGAAATAATGAAGGCTGTGTTGGTGAGCCAAGACAAGCCAAGAATAAATGGTGGAGCCAATATTGATTTGGAGCTAACTCTTGGCTAG 633 0.4502 MKISCNGCRILRKGCTEDCVIRPCLEWINSSEAQANATLFLSKFYGRAGLLNLINAAPQQHRTDVFKSLMYEACGRIINPTFGSVGLFWSGEWAQCQAAVDAVLAGSQINVMPTSHSQSDHGSKLLDIRHVSKDANMDKVRGKSKKHKDVMMPMSHVGLVNSATLWNPILSHEPRRLEGGNGEIMKAVLVSQDKPRINGGANIDLELTLG 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01462 210 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Vian10g01462 210 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 147 - -
Vian10g01462 210 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01462 Vian-Chr10 24909297 24910275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01462 1 209 AS2 family AT3G02550 45.175 3.07e-63 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian10g01462 LOB 1.8e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01462 10 24909297 24910275 Vian10g01462 10 24909297 24910275 ECH