Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01262 ATGTCACCCGATGACATACCACCTTCAAAGCCCGCCACAGCAACAACAACGGACCAAGAGACCCAAAGTTCAGGCGGCAGAAAAGGCTCCTCCACTAGGCCCCAAGAGCAAGGCCTCAAGTGTCCACGATGCGACTCACCCAACACCAAATTCTGCTACTACAACAACTACAGCCTCACACAGCCAAGGCATTTCTGCAAGACATGTAGAAGATACTGGACAAAAGGTGGGGCTTTGCGTAACGTCCCTATTGGCGGTGGATGCAGGAAGAACAAGAAGGTGAGGTCATCGAGGCTTTCATGTGACTCCAAGGACTCTGGTTCCTCCTCTTCAGACCTTGGTGGCCTCAAGTTCCTTCATACTCTTCCTCCTTCCATGGACTTTCACCTTGGAGGGTTACCCTTCCCTAGGCTTCACCATCACCCTCCAGCAACTTATAACCAATTTTCCTCTTTTGGGGACACTTCCAGTCCTTCATGTTTCAACCTTGACCCTTCTCCTGGCACCACCTCAAGTTCTTTCGCTGCTCTTAATTACCCATTTTCTTACAATGGTGCAATCCAAGGTATGAGCGCTATGAATGTTCACAGTGGTCACGCCTCTTCCATTGAGTCTTTGAGTTCTATAAACCAGGACTTGCACTGGAAGTTGCAGCAGCAGCGATTGGCAATGCTGTTTGGTGGAGATAACGGCCAGAAAGATCACGGTGGTAATGGTGGGGTGTCACCAACGATTAACCACCTCGAGAACCAGACACAGAAACCACAACCCATTTTGTTTCAAAATCTTGAGGTTTCAAAGCATGGGATTTTCCCCGTTGAGAACTCTAGAAAAGAAAATGGTCCATGTGGGGACACACACACACCCTCCACTGAGTGGTTCTTTGGGAATTCTTATGCCTCGGTGACTCCTCCTACAGCTACTACTACCAGTAGTGGTGGCCCAGGGAATGATAATGCAAGCAATTGGAGTAGCGGTGTGAATGCTTGGGGTGATGTGCCGCAGCAATATACTGCTTTGCCCTAG 1026 0.4922 MSPDDIPPSKPATATTTDQETQSSGGRKGSSTRPQEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVRSSRLSCDSKDSGSSSSDLGGLKFLHTLPPSMDFHLGGLPFPRLHHHPPATYNQFSSFGDTSSPSCFNLDPSPGTTSSSFAALNYPFSYNGAIQGMSAMNVHSGHASSIESLSSINQDLHWKLQQQRLAMLFGGDNGQKDHGGNGGVSPTINHLENQTQKPQPILFQNLEVSKHGIFPVENSRKENGPCGDTHTPSTEWFFGNSYASVTPPTATTTSSGGPGNDNASNWSSGVNAWGDVPQQYTALP 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01262 341 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Vian10g01262 341 MobiDBLite consensus disorder prediction 304 332 - -
Vian10g01262 341 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Vian10g01262 341 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 223 IPR045174 GO:0003700|GO:0006355
Vian10g01262 341 MobiDBLite consensus disorder prediction 9 37 - -
Vian10g01262 341 MobiDBLite consensus disorder prediction 1 41 - -
Vian10g01262 341 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Vian10g01262 341 MobiDBLite consensus disorder prediction 304 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01262 Vian-Chr10 21106728 21107753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01262 30 341 C2C2-Dof Transcription Factor Family AT5G65590 39.506 2.00e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian10g01262 zf-Dof 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01262 - - gmx:100780729 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01262 10 21106728 21107753 Vian1g02114 1 25713998 25715098 PCT