Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00558 ATGGCTCAGCCACCCTCACCCTCCTTCCTCCTCTGTCATGAACAATACTCCTCTTTCCAACAACATTCTCCAACTCTCATAACCACCCCATCTTCACCTTCCGTTTTTTCCGACGACCACCTCTTCTCCCAACACGACCACCTTCTCTCTCTACTATCCAAAGAGACCGCAACGCATTTCACTCCCTCCCCTTCCCACCACGTCGTACGCTGGATTTCTACACTTTCCCATTTCCACGGTTTCGCTCCTCTCACCACCGTTCTCGCCGTTAACTACTTCAACAGGTTCGTTAACCGAAGGAGCTTTCAGACCGAAGATAAACCGTGGAAGACTCAACTGGCAGCCGTTGCTTGCGTCTCTCTCGCAGCAAAAGTGGAGGAAACACGGGTGCCGCTTCTTTTGGAGTTGCAAGTGGAGGAATCGGAATTTGTGTTTGAAGCGAAGACCATACATACGATGGAGCTCCTCGTGTTGTCCACTCTCGAATGGAAAATGAACCCCGTCACTCCAATCTGTTTCTTTCAACACTTTCTCACAAGGCTTGATTTAAAGCGTCACTTGCACTGGGAATTTATGTGTGGGTGCCAACATGTTCTTCTTTCAGTCATTGCCGATTCAAGGGTTATGAGTTATCTTCCTTCTACATTGTCTGCTGCTATAATGATACACGTTATTGAAGAGATTGAACCATTGAATGCTGCGGAGTACCGAAGTCAACTTCTTGGTTTACTCAAAAGTAACGAGGAGCAAGTGAATGAGTGCTACAAACTGATGCTGGGACTATTAGTCTCCTGTAAAGGGATTCACAATCCTGGTCAGAGGCGCAAACGTGTCTCTGAGCCAAGTAGCCCTGATGGGGTCATTGATGCATCTTTCTGCTGTGAAAGCTCAAATGATTCCTGGTCAGTGGCATCACTTTCTGTGGAGCCAGAGTTAAAGAGGAGAAAAGATGAGGACCAGCAGATTCGTTTGCCCCCAGTGAATCGAGTGTCTATTGATGTTCTAAATATTCCTCGTTAA 1020 0.4706 MAQPPSPSFLLCHEQYSSFQQHSPTLITTPSSPSVFSDDHLFSQHDHLLSLLSKETATHFTPSPSHHVVRWISTLSHFHGFAPLTTVLAVNYFNRFVNRRSFQTEDKPWKTQLAAVACVSLAAKVEETRVPLLLELQVEESEFVFEAKTIHTMELLVLSTLEWKMNPVTPICFFQHFLTRLDLKRHLHWEFMCGCQHVLLSVIADSRVMSYLPSTLSAAIMIHVIEEIEPLNAAEYRSQLLGLLKSNEEQVNECYKLMLGLLVSCKGIHNPGQRRKRVSEPSSPDGVIDASFCCESSNDSWSVASLSVEPELKRRKDEDQQIRLPPVNRVSIDVLNIPR 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00558 339 SUPERFAMILY Cyclin-like 47 166 IPR036915 -
Vian10g00558 339 SMART cyclin_7 70 159 IPR013763 -
Vian10g00558 339 Pfam Cyclin, C-terminal domain 168 268 IPR004367 -
Vian10g00558 339 Pfam Cyclin, N-terminal domain 60 166 IPR006671 -
Vian10g00558 339 SUPERFAMILY Cyclin-like 150 263 IPR036915 -
Vian10g00558 339 Gene3D - 57 166 - -
Vian10g00558 339 CDD CYCLIN_AtCycD-like_rpt2 168 258 - -
Vian10g00558 339 PANTHER CYCLINS 62 269 IPR039361 -
Vian10g00558 339 SMART Cyclin_C_2 168 284 IPR004367 -
Vian10g00558 339 FunFam D6-type cyclin 46 166 - -
Vian10g00558 339 CDD CYCLIN_AtCycD-like_rpt1 69 163 - -
Vian10g00558 339 FunFam CYCLIN D32 167 256 - -
Vian10g00558 339 Gene3D - 167 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00558 Vian-Chr10 5261793 5263097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00558 39 329 Core Cell Cycle Gene Families AT5G67260 47.097 2.66e-87 266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00558 10 5261793 5263097 Vian1g01628 1 18525532 18526990 ECH
Vian4g02225 4 39054106 39058697 Vian10g00558 10 5261793 5263097 ECH
Vian7g00693 7 15116639 15118206 Vian10g00558 10 5261793 5263097 ECH
Vian10g00558 10 5261793 5263097 Vian10g00558 10 5261793 5263097 ECH
Vian10g00558 10 5261793 5263097 Vian3g00356 3 3426713 3428349 PCT
Vian1g01628 1 18525532 18526990 Vian10g00558 10 5261793 5263097 PCT