Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00554 ATGGACCGGATCAAAGGCCCATGGAGCCCCGAGGAGGACGATGCTCTGCAGAACCTGGTGGAGAAGCACGGGCCCAGGAACTGGTCCCTCATCAGTAAGTCCATCCCTGGCCGCTCCGGCAAGTCCTGCAGGCTTCGCTGGTGCAATCAGCTCTCCCCTCAGGTCGAGCACCGGGCCTTCACGCCCGAAGAAGACGACACCATAGTCAGGGCCCATGCTCGCTTCGGGAACAAATGGGCCACCATAGCCCGCTTGCTCCAGGGCAGAACCGACAACGCAATCAAGAACCACTGGAACTCCACCCTGAAGCGCAAGTGCACCTCATCCATCATGGACGACCACCTTCCACCGCTTAAGAGGTCCGTCAGCGCCGGTGCGGCCATCCCGGCCATCCCCGTCTCCACGGGACTCTACATCAACCCTCCCACACCCGGTAGCCCCTCCGGATCCGATGTGAGCGAGTCCAGCGTGCCGGTTGCATCCCCCTCACACGTCTTCCGTCCTGTGCCTAGGACTGCTGCGGTTTTACCGCCAGTAGAAACCACCTCCTCCTCCAATGACCCTCCTACTTCCCTTTCCCTGTCCCTTCCCGGTGTTGACTCTTCTGAGGTCTCAAATCGGGTAACCGAGTCAGCCCACCCTGTACCACCGCCACAGCCGTCGAACACCATCCCTTTGCTGCCAATGATGACTGCTGTTGTGCCCCAGTTGAAGCCACCGGGATTGGGGGCTTTCAATCTAAGTGCAGAGTTTTTGGGGGTGATGCAGGAAATGATAAGGAATGAGGTGAGGAGTTATATGGAGCGGCAGAATCCGAATGGGATGTGTTTTCAGGCAGCCGATGATGGGTTTAGGAATGCTTCCGTCAAGCGAATTGGGATTAGCAGGGTGGACTCGTAA 900 0.5844 MDRIKGPWSPEEDDALQNLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIVRAHARFGNKWATIARLLQGRTDNAIKNHWNSTLKRKCTSSIMDDHLPPLKRSVSAGAAIPAIPVSTGLYINPPTPGSPSGSDVSESSVPVASPSHVFRPVPRTAAVLPPVETTSSSNDPPTSLSLSLPGVDSSEVSNRVTESAHPVPPPQPSNTIPLLPMMTAVVPQLKPPGLGAFNLSAEFLGVMQEMIRNEVRSYMERQNPNGMCFQAADDGFRNASVKRIGISRVDS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00554 299 CDD SANT 7 49 IPR001005 -
Vian10g00554 299 MobiDBLite consensus disorder prediction 178 209 - -
Vian10g00554 299 FunFam MYB transcription factor 5 56 - -
Vian10g00554 299 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Vian10g00554 299 PANTHER MYB PROTEIN-RELATED 5 191 - -
Vian10g00554 299 MobiDBLite consensus disorder prediction 136 164 - -
Vian10g00554 299 Gene3D - 4 56 - -
Vian10g00554 299 Gene3D - 58 120 - -
Vian10g00554 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Vian10g00554 299 Pfam Myb-like DNA-binding domain 8 66 - -
Vian10g00554 299 CDD SANT 59 102 IPR001005 -
Vian10g00554 299 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Vian10g00554 299 MobiDBLite consensus disorder prediction 178 221 - -
Vian10g00554 299 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Vian10g00554 299 FunFam Transcription factor MYB44 59 105 - -
Vian10g00554 299 SMART sant 4 53 IPR001005 -
Vian10g00554 299 SMART sant 56 104 IPR001005 -
Vian10g00554 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
Vian10g00554 299 MobiDBLite consensus disorder prediction 139 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00554 Vian-Chr10 5232948 5233847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00554 2 298 MYB Transcription Factor Family AT5G67300 56.550 8.08e-98 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian10g00554 Myb_DNA-bind_6 2.9e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00554 10 5232948 5233847 Vian1g01625 1 18439408 18440274 ECH
Vian7g00690 7 15068329 15069192 Vian10g00554 10 5232948 5233847 ECH
Vian10g00554 10 5232948 5233847 Vian10g00554 10 5232948 5233847 ECH
Vian1g01625 1 18439408 18440274 Vian10g00554 10 5232948 5233847 PCT