Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04096 ATGGGTTTAAGTTCTAAGCAAGTTTCTAGTAGAAGTGTTGATTGGAACCAAACCTTGTTGCAAGATCAAAACATAGAGCTACCAAAAGTTCATCCTATgaagaaaaaccaacaaactCAAGAATCAGAAGTTGTGAATTGTCCAAGATGTGATTCTACTAATACCAAATTTTGTTACTACAACAACTATAACAAGTCTCAACCTCGTCATTTCTGTAGAGCTTGTAAGAGACATTGGACTAAAGGTGGAACTCTAAGAAATGTTCCTGTTGGGGGTGTaagaaagaataagaaagtCAAAAAATCAACCTCTTCAAATTCTATTAGCACCTCCACAAAAACTACTATTAGTACCACCACAACTTCTATTACCACCCCCACCACCtcaaatatgaaaaatcaaACTTCACAGCAAAAACAGAATCAGAAAAACATATCTTCATCTATATATGATCAATCTGTTATTCATCCACCATCTTTTTTGCCACCTCAGAATCTGATGAGTACTAAAGATCAATCAGAAGGTAATAATGAAGAGTTTGGTATTGGTAATGGTATGTTTCTGAGTTCATCTATGTCTTTTACTCAAAACCAAAGTCTTATATTTCCATTTTCAAACTCAAGCTCTTTAAGATCATCTAATGGATATAACTATGGTGAAGAGTTTAAAACAATGGAGGAGTCAACTATTAACAATAGTGTAATGCCAAGTACTAGTGGTAGTGGCACTATTACACAACCATGGGAGATACCAGCAACCAGCAGTGGTATGATGGATATGTCAAACTATTGGAGTTGGGAGGATATTGATTCTTTGGTATCAACTGATCTTAATGTTCCTTGGGATGATTCTGATATCAATCCTtga 867 0.3345 MGLSSKQVSSRSVDWNQTLLQDQNIELPKVHPMKKNQQTQESEVVNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGVRKNKKVKKSTSSNSISTSTKTTISTTTTSITTPTTSNMKNQTSQQKQNQKNISSSIYDQSVIHPPSFLPPQNLMSTKDQSEGNNEEFGIGNGMFLSSSMSFTQNQSLIFPFSNSSSLRSSNGYNYGEEFKTMEESTINNSVMPSTSGSGTITQPWEIPATSSGMMDMSNYWSWEDIDSLVSTDLNVPWDDSDINP 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04096 288 ProSitePatterns Zinc finger Dof-type signature. 47 83 IPR003851 GO:0003677|GO:0006355
Tsu08g04096 288 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 231 IPR045174 GO:0003700|GO:0006355
Tsu08g04096 288 ProSiteProfiles Zinc finger Dof-type profile. 45 99 IPR003851 GO:0003677|GO:0006355
Tsu08g04096 288 MobiDBLite consensus disorder prediction 102 175 - -
Tsu08g04096 288 PANTHER OS06G0284500 PROTEIN 17 231 - -
Tsu08g04096 288 Pfam Dof domain, zinc finger 43 98 IPR003851 GO:0003677|GO:0006355
Tsu08g04096 288 MobiDBLite consensus disorder prediction 95 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04096 Tsu-Chr8 59226861 59228466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04096 45 101 C2C2-Dof Transcription Factor Family AT1G28310 79.310 1.90e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu08g04096 zf-Dof 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04096 - - gmx:100806358 322.398