Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04063 ATGGAGCAAGAAGGTGGTGGGGAGGGTGGAAGAAGGGCTGAGATGAATAAGCAACTTCTAGTTCATCCTCAGCCTCCTCAGCAGTGTCCTAGGTGTGAATCATTTAACACTAAGTTTTGCTACTATAATAATTATAGTCTGAACCAGCCTCGTTACTTCTGCAAACATTGCAGAAGGTACTGGACTCAAGGTGGAACATTGAGAAATGTTCCGGTTGGTGGCGGTTCTCGTAAAGGTAAAAAAGCTAAGAACTCACCTTCAGCTTCTGTAAGTAATTCCTCTGGGAATTCTTCTGTGTCTCAGCCAATGCTGGCACAGCAGACTCAGTCTGCTGTGGCTGCGATGGCTAACGACTCTGCATTGACTTTGTCTTCGTTTTCCTCTGCTGCTCCTTTTTATCAAGGTGGTGGTGGGGTTGGTGGGGTTGGTTACATGTCGTCCTTTGCGTTTAACCAATCTATGAACCCAAATCCATCAGcacacaattttgatcatcCGTCTCTCAACGTTGCTGGTGTTGGTGCTGGTGTTGGTCCATCTTCAAATTTGAGTCTTTTACAAGGCTTTaatgttgctgctgctgctgctgctctTGGAAATTCATCACAAGGGCAAAACCGTCCATCGCTTCAACAATACTATCAAATGGGTGGTAATGGTGGAACAATGTTTACCTCACAACAACAAGGTTTGAACTTGATTCCCTCATCTACCATGTCCAATGCTAGTGCTGCTGCTTGGCCTCAAAGCTTCATGAATAACGGTACTATCAGCACCACTTCCATTCCTACTGTTAATTCTGATAGGAATGGTAATGGTGCTGGTGGTAGCGGTAATGGTGGTGTTGGTGCTGGTGCTGATGGTTCTGCTGGTTTGACTCCAAATCAATGGCCGGATCTGTCCGGATTCAACCCTCCTCAGTGA 924 0.4372 MEQEGGGEGGRRAEMNKQLLVHPQPPQQCPRCESFNTKFCYYNNYSLNQPRYFCKHCRRYWTQGGTLRNVPVGGGSRKGKKAKNSPSASVSNSSGNSSVSQPMLAQQTQSAVAAMANDSALTLSSFSSAAPFYQGGGGVGGVGYMSSFAFNQSMNPNPSAHNFDHPSLNVAGVGAGVGPSSNLSLLQGFNVAAAAAALGNSSQGQNRPSLQQYYQMGGNGGTMFTSQQQGLNLIPSSTMSNASAAAWPQSFMNNGTISTTSIPTVNSDRNGNGAGGSGNGGVGAGADGSAGLTPNQWPDLSGFNPPQ 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04063 307 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 21 307 IPR045174 GO:0003700|GO:0006355
Tsu08g04063 307 Pfam Dof domain, zinc finger 26 81 IPR003851 GO:0003677|GO:0006355
Tsu08g04063 307 MobiDBLite consensus disorder prediction 82 104 - -
Tsu08g04063 307 MobiDBLite consensus disorder prediction 258 274 - -
Tsu08g04063 307 ProSiteProfiles Zinc finger Dof-type profile. 27 81 IPR003851 GO:0003677|GO:0006355
Tsu08g04063 307 MobiDBLite consensus disorder prediction 68 104 - -
Tsu08g04063 307 ProSitePatterns Zinc finger Dof-type signature. 29 65 IPR003851 GO:0003677|GO:0006355
Tsu08g04063 307 MobiDBLite consensus disorder prediction 258 307 - -
Tsu08g04063 307 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 21 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04063 Tsu-Chr8 58864047 58864970 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04063 20 90 C2C2-Dof Transcription Factor Family AT5G60200 67.568 9.23e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu08g04063 zf-Dof 2.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04063 - - mtr:MTR_2g014060 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g04063 08 58864047 58864970 Tsu08g04063 08 58864047 58864970 ECH