Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04062 ATGTTAGCTAACTGTGAGAAAATGGTTGCCATCCCTCCAACTACTAACCAATGGCCACAGAATCAGATAGATGATGGTAAAGTAATTATGGAAAAACAAGGTCAAGAGCTTATGCAACAACAAGCACTTAAGTGTCCACGTTGTGATTCATCAAACACAAAATTCTGTTACTACAACAATTACAGCTTGTCACAACCAAGACACTTCTGTAAAGCCTGCAAACGTTATTGGACAAGAGGTGGTACTCTTAGGAATGTTCCTGTTGGTGGCGGCTACAGAAGAAACAACAAACGCGgtaatactactactactactactgctACTGCTCTCGTCAAAAGACCAATATCCACCATTGATTCTACTACTACTTCTTCTTCGGCTCTTAGTTCAACCTTAAATCATATTAGTCCTATGTTTTATGGTTTATCTAGACTCTCGAATTCATCTGAGTATGATTTTCATCCTCAGATGAACTCGATTGGATTAGGTGGCTTTTCATCATCTGGGTTTGATcataatggatttacttcaaataataaCAATCATGTTTTAAGATATGATTCTTCAACTTCAATGTCAGTTATGCCTTCTACTCTGCTGCAATATAATTTCAACAATGATGGTTTGAAATATAGTCAAGATGCAAGTAGCAACTGTACTTTTCAAGGTTTAGAATTTGCTTCACTAGAGCATATGCAAAGAGCTATAAGTAGTATTGGGAATGGAAGTGAGAAAGGGATGAAGAAAGTTGAAGGACAGAACCAGATTGAGCATGTGAATGGTTTGTATGATCCTTCTTCATTTTTCTGGAATGATCAAGGTGCTAATATTGGTTCATCAGTCACTTCTCTGATCTAG 858 0.3543 MLANCEKMVAIPPTTNQWPQNQIDDGKVIMEKQGQELMQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGYRRNNKRGNTTTTTTATALVKRPISTIDSTTTSSSALSSTLNHISPMFYGLSRLSNSSEYDFHPQMNSIGLGGFSSSGFDHNGFTSNNNNHVLRYDSSTSMSVMPSTLLQYNFNNDGLKYSQDASSNCTFQGLEFASLEHMQRAISSIGNGSEKGMKKVEGQNQIEHVNGLYDPSSFFWNDQGANIGSSVTSLI 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04062 285 PANTHER DOF ZINC FINGER PROTEIN DOF2.4-LIKE 33 207 - -
Tsu08g04062 285 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 33 207 IPR045174 GO:0003700|GO:0006355
Tsu08g04062 285 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Tsu08g04062 285 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
Tsu08g04062 285 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04062 Tsu-Chr8 58844827 58846017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04062 1 143 C2C2-Dof Transcription Factor Family AT1G28310 50.993 1.81e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu08g04062 zf-Dof 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04062 - - mtr:MTR_2g014170 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g04062 08 58844827 58846017 Tsu08g04062 08 58844827 58846017 ECH
Tsu02g01945 02 18378641 18380057 Tsu08g04062 08 58844827 58846017 PCT