Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03950 ATGGATGAAGAAGTTAGAAAAGATGAagagaataataataatcaagGGATTAAGCTATTTGGCACAACAATAAAACTACATGATAAGGAATCAaaagaaggagaaaaagaaagcCAAGATCAAACGGTGGAGAAGAGATCAGAAAAGATCATACCGTGTCCAAGATGCAAAAGCATGGAAACTAAATTTTGTTACTTCAACAACTACAACGTTAATCAACCAAGACATTTTTGTAAAGGCTGTCAGAGATATTGGACAGCTGGTGGGGCCCTCCGTAACGTACCGATTGGAGCCGGACGTCGGAAGGCCAAGCCGCCGGGTCAAGAAGATAGTGGTTCACCGGATAGTTGTCTATATGAAGCTTCTAATGATGGAGATAAGTGGCACGTCGGCGCGCCTCCTCGGAGCGATTTCCGGGAAGTTTTCTCCGGTAAGCGGCAGAGGGTGACCTCAGGTGGTTATTCATTAGCTTTGTTGTGA 480 0.4146 MDEEVRKDEENNNNQGIKLFGTTIKLHDKESKEGEKESQDQTVEKRSEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKAKPPGQEDSGSPDSCLYEASNDGDKWHVGAPPRSDFREVFSGKRQRVTSGGYSLALL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03950 159 MobiDBLite consensus disorder prediction 96 139 - -
Tsu08g03950 159 ProSitePatterns Zinc finger Dof-type signature. 53 89 IPR003851 GO:0003677|GO:0006355
Tsu08g03950 159 MobiDBLite consensus disorder prediction 23 47 - -
Tsu08g03950 159 MobiDBLite consensus disorder prediction 1 47 - -
Tsu08g03950 159 ProSiteProfiles Zinc finger Dof-type profile. 51 105 IPR003851 GO:0003677|GO:0006355
Tsu08g03950 159 Pfam Dof domain, zinc finger 49 104 IPR003851 GO:0003677|GO:0006355
Tsu08g03950 159 PANTHER CYCLIC DOF FACTOR 2 12 154 IPR045174 GO:0003700|GO:0006355
Tsu08g03950 159 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 12 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03950 Tsu-Chr8 57813836 57814367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03950 11 155 C2C2-Dof Transcription Factor Family AT1G29160 50.000 1.94e-50 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu08g03950 zf-Dof 5.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03950 - - tcc:18596691 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03950 08 57813836 57814367 Tsu08g03950 08 57813836 57814367 ECH