Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02994 ATGTTCCAACAAAGACATAACAATATTAGTACTACCGAGCTAGATCAAATGTTACATATGCTAACTTCTTCTAATTCTTCTATTCCAATGCCATTTCAAACAACCTCAATGGacaaatcaaattcaaagtGGAAACCAAACATTGAAATTGCTCCTAATTGTCCTCGTTGTGCTTCAACTCACACAAAATTTTGTTACTACAACAATTATAGCCTCTCACAACCAAGATATTTTTGTAAAGGTTGTAGACGCTATTGGACTAAAGGTGGCTCTCTTCGAAATGTTCCGATCGGTGGTGGTTGCCGTAAAACCCGTCGCGGAAAGGCGGTTAGAAATTTGCAGAATTCTGACCGTCTTTCCGCAAATGGTTCTGTTGATGATGGAGATGGTAATCATCAACCGAATCAAAATAACGGGTCACGTGATATAGATATGGCGGTTGTTTTCGCCCAATTCTTAAACCAAAATCCAAATACTACTACTAATCATCATTGTGATGAGGATTTAGAAATTGAGAATGAGCCTAACAATAATAATGGATTGTCTTCTTCTTCAAACAATGTTAACAATTTATCAACAACGCCGGATAGCGTTGAAACGGAGAACGATGCAGTGGTTCAGAGTCAAAATCCTTTTGATCAAGAATTGAGTTTGAGTGGAATTGAATATGATCAATTTGAAGGATTACTTGGTGTTGATGAAGATGTGGTACAAGATGTTCTATGGTCTGAATCTGATGCTATGAATATGATGGTGTCATCATCAAATAATTATACATGGCAACAACCATCTACCATGATGCAAATGGAATTGGAATATTCAATGCCATTGAATGAAGATTGTGGTACTCATCATGATCAATTATTACCTCTTAATGTTAATTCAAATTCTACTAATGTCAATTTGATAAGTGATCAAAGTTGGATTAGTAATTCTTGGGATTCTTTTGATCTTTCAACTATGGAAGTCTTCTCATCAAGTTCAAGACCTTAA 993 0.3525 MFQQRHNNISTTELDQMLHMLTSSNSSIPMPFQTTSMDKSNSKWKPNIEIAPNCPRCASTHTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPIGGGCRKTRRGKAVRNLQNSDRLSANGSVDDGDGNHQPNQNNGSRDIDMAVVFAQFLNQNPNTTTNHHCDEDLEIENEPNNNNGLSSSSNNVNNLSTTPDSVETENDAVVQSQNPFDQELSLSGIEYDQFEGLLGVDEDVVQDVLWSESDAMNMMVSSSNNYTWQQPSTMMQMELEYSMPLNEDCGTHHDQLLPLNVNSNSTNVNLISDQSWISNSWDSFDLSTMEVFSSSSRP 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02994 330 MobiDBLite consensus disorder prediction 102 140 - -
Tsu08g02994 330 PANTHER DOF ZINC FINGER PROTEIN DOF1.2 35 285 - -
Tsu08g02994 330 MobiDBLite consensus disorder prediction 157 197 - -
Tsu08g02994 330 Pfam Dof domain, zinc finger 52 105 IPR003851 GO:0003677|GO:0006355
Tsu08g02994 330 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
Tsu08g02994 330 MobiDBLite consensus disorder prediction 113 140 - -
Tsu08g02994 330 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 35 285 IPR045174 GO:0003700|GO:0006355
Tsu08g02994 330 MobiDBLite consensus disorder prediction 174 197 - -
Tsu08g02994 330 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02994 Tsu-Chr8 45584262 45585272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02994 44 158 C2C2-Dof Transcription Factor Family AT3G52440 57.983 1.84e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu08g02994 zf-Dof 5.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02994 - - mtr:MTR_3g090430 473.011